Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00819 ATGGCTGACACGTTCAACTCGTCTTCTTCGCCCGGACTCGACCTAAAGAAGGGTAAGCGAGCCCGGGAAAGTAACGGCAAGCACCCGGTTTACAGAGGGGTGCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGGGAACCGAGAAAGAAGAACCGGATTTGGCTCGGAACCTTCTCGACGCCGGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTTTGACAATCAAAGGCAAATCCGCTATTCTCAACTTCCCGGCACTTGCTGGCTTGCTTCCCCAACCGGCTTCGAACTCTCCCCGCGACGTTCAAGCCGCCGCTGCTTTGGCCGCTTCGATGGATGTTCTTCCGGCGACTCCACCAGAATCCTCACCGCCTCCACCGTCTGAACAATCATCTTCTTCCTCCTTATTCGACATTCCTTCTCCGGAGGAACTCAGCGCCATCGTAGAGCTTCCGAGCTTAGGAACTAGCTACGAATCGCCCGGGTCAGAATTCGTGTTTCTGGACTCGGAAGATCGGTGGCTCTACGCAGAAGACTACGAATATTTCACCCATCAGATATCAGAGACGGAAACAGACAGCTTCCAATTTTTCTTGTGGCGCCATTAA 615 54.47 MADTFNSSSSPGLDLKKGKRARESNGKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFSTPEMAARAHDVAALTIKGKSAILNFPALAGLLPQPASNSPRDVQAAAALAASMDVLPATPPESSPPPPSEQSSSSSLFDIPSPEELSAIVELPSLGTSYESPGSEFVFLDSEDRWLYAEDYEYFTHQISETETDSFQFFLWRH 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41823166 41823780 + Bma023848.1 Bma06g00819 84321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00819 204 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Bma06g00819 204 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Bma06g00819 204 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Bma06g00819 204 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Bma06g00819 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 188 - -
Bma06g00819 204 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Bma06g00819 204 MobiDBLite consensus disorder prediction 117 139 - -
Bma06g00819 204 MobiDBLite consensus disorder prediction 1 27 - -
Bma06g00819 204 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Bma06g00819 204 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Bma06g00819 204 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 188 - -
Bma06g00819 204 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00199 Bma-Chr1:1748357 Bma06g00819 Bma-Chr6:41823166 1.10E-92 dispersed
Bma06g00819 Bma-Chr6:41823166 Bma07g01043 Bma-Chr7:41991004 2.66E-48 dispersed
Bma02g00047 Bma-Chr2:440986 Bma06g00819 Bma-Chr6:41823166 5.14E-58 transposed
Bma08g00970 Bma-Chr8:48670286 Bma06g00819 Bma-Chr6:41823166 3.46E-63 transposed
Bma13g00916 Bma-Chr13:39582644 Bma06g00819 Bma-Chr6:41823166 1.21E-69 transposed
Bma01g00198 Bma-Chr1:1736158 Bma06g00819 Bma-Chr6:41823166 3.19E-101 wgd
Bma11g00534 Bma-Chr11:6799293 Bma06g00819 Bma-Chr6:41823166 6.08E-65 wgd
Bma06g00819 Bma-Chr6:41823166 Bma07g00513 Bma-Chr7:6393305 8.74E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57482 PF00847 AP2 1.30E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00819 K09286 - jre:108986620 228.794