Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00840 ATGATGCTCGGCAAACCGTACCGCACCGAGGTCCTTCCCTGGTCGGTCGTCGACGATGATTCAACGTCTGATGGGTTCTCTTCTTATGGCAGATCTCTTCACTCTGAAGGCAATGCAAATGGGGGAGACTACTCTCCTCAGTATCTGCAAGATGCTTTGATGGCGTTGCAGCGGTACCTGCCGTCGAATGAACCGGACGTGGATTACGACGGTGAGGGTTTTGGTCGGGAAATGGATTCTCCGGTTGACGCTTACTCCTGTGACCATTTCCGGATGTTTGAGTTCAAAGTGAGGAGGTGCGCTAGAGGAAGGTCTCATGACTGGACAGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAATATCATTATTCTGGTACGGCTTGTCCGGATTTTCGTAAGGGAAGCTGCAAGAGAGGCGATTCATGCGAGTTCGCACATGGCGTTTTCGAGTGCTGGCTTCACCCGGCCCGGTACAGGACTCAGCCGTGCAAGGACGGAACGAGTTGCCGGCGACGGGTTTGTTTCTTCGCTCACACGGCGGAGCAACTCCGAGTTCTACCACATCAGAGTCCGAGGAGTTCGAAACGCTGCTTCTTACTCCTACGACGGTTCACCTCTCCGGCAAGCGATCGAAGCGTCCTGTGCAAAAACGCTGACGTTTTGTCTTCTCCAACAATTTCACCGCCGGTGACTCCTCAAGCAGAGTCTCCGCCCATGTCGCCAATGGCTCAGTCTCTCAGCCGGTCTTTCGGATCTAACCCGGTTGGAGAAATGGCGGCTTCCCTTCGAAACTTGCAGCTGGGCAAAGTGAAGTCTCTTCCCTCCGCTTGGAATATACAAATAGGAGGGTCTCCGAGAGGATCCATCCTCCGACCTGACGGCTGCAGCCTACCGGTGACGCCAACTCGAGCTTCACCTCGTCCTGCCAATGGCGGGTACCTGGACTTTTGGGAACAGACCGTTGAGGAGGAGCCAGCGATGGAAAGGGTAGAGTCAGGGAGAGATCTGAGGGCCAAAATGTTTGAAAAACTGAGCAAGGAAAACTCAATCAATGGAGCCCATCCCGATTCCTCGTCTGCTACACCGGACGTCGGCTGGATTTCGGAGCTGGTGCAGTAG 1140 54.91 MMLGKPYRTEVLPWSVVDDDSTSDGFSSYGRSLHSEGNANGGDYSPQYLQDALMALQRYLPSNEPDVDYDGEGFGREMDSPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKRGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPHQSPRSSKRCFLLLRRFTSPASDRSVLCKNADVLSSPTISPPVTPQAESPPMSPMAQSLSRSFGSNPVGEMAASLRNLQLGKVKSLPSAWNIQIGGSPRGSILRPDGCSLPVTPTRASPRPANGGYLDFWEQTVEEEPAMERVESGRDLRAKMFEKLSKENSINGAHPDSSSATPDVGWISELVQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42728230 42729369 + Bma023880.1 Bma06g00840 84342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00840 379 MobiDBLite consensus disorder prediction 354 379 - -
Bma06g00840 379 SUPERFAMILY CCCH zinc finger 128 158 IPR036855 GO:0046872
Bma06g00840 379 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Bma06g00840 379 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Bma06g00840 379 MobiDBLite consensus disorder prediction 231 257 - -
Bma06g00840 379 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Bma06g00840 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 379 - -
Bma06g00840 379 Gene3D - 129 193 - -
Bma06g00840 379 MobiDBLite consensus disorder prediction 357 372 - -
Bma06g00840 379 PANTHER UNKEMPT FAMILY MEMBER 9 379 IPR045234 -
Bma06g00840 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00840 Bma11g00559 CCT
Bma06g00840 Bma11g00559 ECH
Bma01g00217 Bma06g00840 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00679 Bma-Chr1:6211409 Bma06g00840 Bma-Chr6:42728230 1.78E-118 dispersed
Bma06g00840 Bma-Chr6:42728230 Bma11g00559 Bma-Chr11:7612067 3.99E-118 dispersed
Bma01g00217 Bma-Chr1:1937404 Bma06g00840 Bma-Chr6:42728230 0 wgd
Bma11g00553 Bma-Chr11:7572913 Bma06g00840 Bma-Chr6:42728230 6.19E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57483 PF00642 zf-CCCH 1.60E-07 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00840 - - jre:109010264 525.398