Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00874 ATGGCGATTCTTGAAAACGGTGGACGTGGAGAGGAGAGAGCTGCTGACGGTGGTGCAATTTTTCCGGCTTTATCGCCGACGCTTTATCCAAATTCTGGCAGCTCTACTGAGACAGAGGATGTCGAGGAAGAGAAGTTATGGTTGATTGATGATGATAGTAATTACGGAAACAACAAAGTTAGTATTAGTTTTAGCTCCACTGATTCTCGAGGAAACGGCTATGGCGGTGGAGTTGGAGTTAGCGGTGGATCATTATCGTTATCATCATCGTCGTCATCGTCATCGCAATATTCTTCTTCTTTATCGAGTGGGTTGATCAAGTCCGAAATTAGGTGTTCTCCGTTGTCGGTGAAAAGCTCCAATAAGGTAGCAATCAAAGAGGAGAGTATTGAGGCTGTTGATGAAGTTGAAGGTGGAGCTTGGGGATATAGTTATGGCTGCAATATGTCTTTCTCATCGTCTACGCATGCTGATTTTCCAAAGCCGATGGAGGGCTTACACGAGGCGGGACCTCCTCCATTTCTGAAGAAAACCTTTGAAATGGTTGAGGACCCCGAATCCGATCCAATTGTGTCGTGGAATCAAGGTCGTGACAGCTTTATTGTTTGGGACTGCCATGAATTATCCAAAAATCTGCTCCCAAAATATTTCAAGCACAGCAACTTCTCAAGCTTCATACGCCAGCTGAACACCTATGGTTTTAGGAAGATTGATACGGATAGATGGGAGTTTGCAAATGAAGGGTTTCTAGGAGGAAAGAAGCATTTGCTGAAGACCATAAAGAGAAGAAGTAGGTTTAACAAGCAGCAATTAATGGCCATTACTAGTTTAGATTTAGCAAAATCTGGAGTTGGTGGGGAACTGGAAACACTAAAGAAAGATCAAACTAAGTTGAAAGTGAAAATCCTGAAACTGAGGCAAGAACACGAGGAATCACAAAATAGACTTACCGCGGTTGAAGAGCGTATTCGAGGTGCGGAGTGCAAGCAGCAACAAATGCTCTCTTTCCTCATCAAAATGGCTAAAACTCCCTCCTTTGTTCACCAATTGATGCAAAAGAGAGTCCGAAAAAATGGGCTTGATTTCAATGAGTTTTGCAAGAGACCGAGATTGCTCTCACCAGGTGACCTTGAGATCTTAACGGAAACTTCCACTAACGCTTTCCAAAGTGTAGAATGTAATAACCTTGTAGAGAAAGAGTTGAACACTTCCCAATCTGACCTTACAGTCACAGATATGTTTCTAGAACCTGAGGTTCTTCACCCGCAAGAAACACCGCTCCAATCTTTCATTGACGATAAATCATGCAGCTTTCTTCAGGGTCAGAGACCTAGCATGGTTTCAATTGCCAACAACGAGAATAGTTCATCAGCCTATCGTATGATGTCTGATAATCTGCTGGGGGGAAATCCAATTGTTGACTCGGAGTTGACAGGCAATGACTTGAAGTTTTATCTTGAATTGGAGGACTTGGTTAGGAAGCCACATGACAGGGGAGGTTACATAAGCAGCCATATGGCTTAG 1524 43.31 MAILENGGRGEERAADGGAIFPALSPTLYPNSGSSTETEDVEEEKLWLIDDDSNYGNNKVSISFSSTDSRGNGYGGGVGVSGGSLSLSSSSSSSSQYSSSLSSGLIKSEIRCSPLSVKSSNKVAIKEESIEAVDEVEGGAWGYSYGCNMSFSSSTHADFPKPMEGLHEAGPPPFLKKTFEMVEDPESDPIVSWNQGRDSFIVWDCHELSKNLLPKYFKHSNFSSFIRQLNTYGFRKIDTDRWEFANEGFLGGKKHLLKTIKRRSRFNKQQLMAITSLDLAKSGVGGELETLKKDQTKLKVKILKLRQEHEESQNRLTAVEERIRGAECKQQQMLSFLIKMAKTPSFVHQLMQKRVRKNGLDFNEFCKRPRLLSPGDLEILTETSTNAFQSVECNNLVEKELNTSQSDLTVTDMFLEPEVLHPQETPLQSFIDDKSCSFLQGQRPSMVSIANNENSSSAYRMMSDNLLGGNPIVDSELTGNDLKFYLELEDLVRKPHDRGGYISSHMA 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43533852 43535793 + Bma023929.1 Bma06g00874 84376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00874 507 SUPERFAMILY Winged helix DNA-binding domain 170 263 IPR036390 -
Bma06g00874 507 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 153 484 - -
Bma06g00874 507 ProSitePatterns HSF-type DNA-binding domain signature. 213 237 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma06g00874 507 Gene3D - 166 264 IPR036388 -
Bma06g00874 507 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 153 484 IPR027725 -
Bma06g00874 507 SMART hsfneu3 170 263 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma06g00874 507 Coils Coil 288 329 - -
Bma06g00874 507 Pfam HSF-type DNA-binding 174 263 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma06g00874 507 PRINTS Heat shock factor (HSF) domain signature 212 224 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma06g00874 507 PRINTS Heat shock factor (HSF) domain signature 225 237 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma06g00874 507 PRINTS Heat shock factor (HSF) domain signature 174 197 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00874 K09419 HSFF; heat shock transcription factor, other eukaryote - zju:107424074 390.578
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00243 Bma06g00874 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00528 Bma-Chr2:10468751 Bma06g00874 Bma-Chr6:43533852 7.56E-78 dispersed
Bma05g00705 Bma-Chr5:41049002 Bma06g00874 Bma-Chr6:43533852 7.07E-63 dispersed
Bma06g00874 Bma-Chr6:43533852 Bma12g00234 Bma-Chr12:3039218 1.54E-55 dispersed
Bma01g00243 Bma-Chr1:2113245 Bma06g00874 Bma-Chr6:43533852 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g164 Blo01g00555 Blo16g00980 Bda01g02007 Bda11g01040 . Bpe02g02194 . . . . Cma05g01399 Cma12g00642 Car05g01314 Car12g00591 . . . . . . . . . . . . . . . . . . . . . . Csa02g00041 Chy05g01447 . . . . . . Bpe13g01250 Bma01g00243 Bma06g00874 Sed03g1798 Cmo05g01400 Cmo12g00581 . . . . Cpe11g01174 . Bhi06g01635 Tan08g0057 Cmetu05g1296 . . . . . . . . . . . Lsi11g00182 . . Cme05g02050
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010256 3 2 2 2 2 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57485 PF00447 HSF_DNA-bind 8.80E-31 CL0123 Bma TF