Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00881 ATGAACCCCGACCTCGAACTCACTCTCCCTCCTCCCAACGGAAAGGAGTCTGATGAATCGGAAAACTTGGAGACTGCAACCGGCGAAAGTATCGTCCAATCGATTAACCTCAACCTCAAACTCACTCTCCCTATTTCCGACGAAGCTTCATTGGCCACTTTTTTAACTAATAGTGGTACATTCATGGACGGTGATCTTCTCATCAATCGGGAGGGAGTTCAAATTGTCTGTCAGACTCAGAAAGAAGCTGAAAATTCATGTCAACTCAACCCCTCAGACAGCCAGTGGAGTTTGGAAGACATGGATACAGTTAAAGTCATCGGAAAAGGAAACGGCGGAGTTGTTAAGCTGGTGAAGCACAAAGCCACCGGCCAGTTTTTCGCATTGAAGGTTATTCAAATGAAGATCGAGGAGAGTTATCGGAAACAGGTAGCGAGGGAACTGAAAATTAATCAGTCAGCTCGAAGCCCATATGTGGTGGTCTGTTATCAGTCTTTCTACTACAATGGAGTCATTTCAATTATCTTAGAGTACATGGATGGAGGGAGTCTAGCAGATTTTCTGAAACAAGTTAAGTCGATTCCTGAGGAATATCTTGCTGCAATATGTAAACAGGTGCTGAGGGGACTTTTGTACCTTCACCATGAAATGCACATAATTCACAGGGACTTGAAGCCTTCAAATCTGCTTATAAATCACAAAGGAGAAGTCAAGATTAGTGATTTTGGTGTGAGCAGAATAATGGCAAGCACCTCTGGACAGGCCAATACCTTTGTTGGAACATACAAGTACATGTCTCCAGAGAGGATTGATGGAGAAAGATATGACAAGAAAAGTGATATTTGGAGCTTGGGACTGATTTTACTGGAGTGTGCAATTGGTCAGTTTCCTTATTCTCCACCAGAGGAAGGTGGAAGCTTGGATAACTTCTTTGATGTTATGCAAGTCATTGTTAATGGACCTCCTCCTTCTGCTCCTTCTCCCGGATTTTCTCCGCAGTTCTGCTCCTTCATTTCCGCATGCTTAGAAAAAGAGCCGAAAGACAGACTCTCGGCTCGTGAGCTTATGGTGCATCCTTTTCTGAATGCATATGAAGACTTGGATGTGGATCTATCATCGTACTTCGCAGACGCCGGATCTCCATTTCCACCCTCTTAG 1158 44.04 MNPDLELTLPPPNGKESDESENLETATGESIVQSINLNLKLTLPISDEASLATFLTNSGTFMDGDLLINREGVQIVCQTQKEAENSCQLNPSDSQWSLEDMDTVKVIGKGNGGVVKLVKHKATGQFFALKVIQMKIEESYRKQVARELKINQSARSPYVVVCYQSFYYNGVISIILEYMDGGSLADFLKQVKSIPEEYLAAICKQVLRGLLYLHHEMHIIHRDLKPSNLLINHKGEVKISDFGVSRIMASTSGQANTFVGTYKYMSPERIDGERYDKKSDIWSLGLILLECAIGQFPYSPPEEGGSLDNFFDVMQVIVNGPPPSAPSPGFSPQFCSFISACLEKEPKDRLSARELMVHPFLNAYEDLDVDLSSYFADAGSPFPPS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43614687 43617953 + Bma023938.2 Bma06g00881 84383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00881 385 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Bma06g00881 385 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
Bma06g00881 385 SUPERFAMILY Protein kinase-like (PK-like) 94 366 IPR011009 -
Bma06g00881 385 PANTHER MAP KINASE KINASE 33 380 - -
Bma06g00881 385 ProSiteProfiles Protein kinase domain profile. 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00881 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Bma06g00881 385 Pfam Protein kinase domain 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00881 385 MobiDBLite consensus disorder prediction 1 23 - -
Bma06g00881 385 CDD PKc_MAPKK_plant_like 99 365 - -
Bma06g00881 385 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 33 380 - -
Bma06g00881 385 SMART serkin_6 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00881 385 Gene3D Transferase(Phosphotransferase) domain 1 181 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00881 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - cit:102625262 502.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00211 Bma-Chr1:1878817 Bma06g00881 Bma-Chr6:43614687 3.69E-131 dispersed
Bma06g00881 Bma-Chr6:43614687 Bma11g00589 Bma-Chr11:8789921 3.65E-141 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00881 . 56 384 MAP Kinase Kinase Gene Family AT4G26070 61.1 1.4e-118 422.9
Bma01g00211 . 26 374 MAP Kinase Kinase Gene Family AT4G26070 52.8 1.7e-100 362.8
Bma11g00589 . 27 266 MAP Kinase Kinase Gene Family AT4G26070 70.8 6.9e-97 350.9
Bma06g00881 . 38 357 MAP Kinase Kinase Gene Family AT4G29810 62.0 2.3e-116 415.6
Bma11g00589 . 1 266 MAP Kinase Kinase Gene Family AT4G29810 70.9 4.1e-110 394.8
Bma01g00211 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 55.0 1.6e-101 366.3
Bma14g01892 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma14g01928 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT1G51660 67.6 2.9e-133 471.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT3G21220 66.7 7.0e-129 457.2
Bma01g00211 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 79.4 2.8e-165 578.2
Bma06g00881 . 39 372 MAP Kinase Kinase Gene Family AT5G56580 58.3 2.3e-111 399.1
Bma11g00589 . 16 266 MAP Kinase Kinase Gene Family AT5G56580 61.9 1.4e-87 320.1
Bma10g00703 . 34 315 MAP Kinase Kinase Gene Family AT1G73500 50.2 5.9e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66549 PF00069 Pkinase 2.00E-70 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00881 Bma_Chr06 FPKM 20.802298 21.877434 19.709545 20.482643 27.258638 26.828962 29.779324 3.767099 4.021554 3.453214