Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00882 ATGAGCGACCCCGGTGATTTTTCAGCTACAGCAGTTAGGACAGTTATGGTGGCAGTTAACGGTGTTCCCGGCCGAAGCAGTGGCGGCGGAAGCCGACGCGCGGTCCAATGGACCGTGGAGAATCTCTTGCCCGGTGCTGGTCGTCTCCTCTTAGTTCATGTCATGCCCAAAATTACTTCGATTCCCACTCCATTGGGAGATGGAGTCCCCGTTTCGGCTCTTGATGCGAACGTGGTTGCTCTTTATACGCACGACATGAAAGAGAAATTCGATCAAATTTTTGTCCCGTTTAAGAAGCTTTGCAGGAAAACCAAAGTTGAAACTCTGGTGCTTGAAGATGACAACCCAGCTACAGCGCTTGTAAGATATATATCTGCGTCTGATATCAAAACATTGGTGTTGGGTTCTTGTTCTTCAAATTTCATGACAAGGAAGCTTAAAGGACCTGGAGTACCAACGACAGTTCTGAGAAATGCTCCAAATAGTTGTAATATCTTCATTATATCAAAGCGTAGAATCATTAAAAGAACCACAAGTTCCTCGCCAACCAATGAGACCGATTCTCAGCAGTGCATACCGAGTGAAAGTAACTACGAAGTAGGTGCTGATAGGTTCTGTTCTTCATCTGCGGAATCAGAAGGCAGTAACAGAACTGTATATTCAGAAAGGATTCATGATGACTTGGAAAACAAACGAGAGATTGATTCTAGTAAATTAGATTTCGCAGCCTTCGAAACTGAGCAGGTAGATATGCAGCGTGAGATTGAGTCACTGCAGCTAGATTTAGAAAACACTGTTGCCATGTATAAACGTGCTTGTGAAGAACTGGTCCATACCCAGAATAAGGCGCATTCACTTTCCTCTGAATGCCATGAAGAAACAAGAAGAGTGAAATCTGCCATGGAAAGAGAAGAAGATTTGAGGAAAATTGCAGCTGAAGAAAAAGCTAAGCATTTAGAAGCCATGGAGGCACTAGAGGAAGCAAAAGTTTTACTGGCTAAAGAGGCATATGAGAGGCAGTTGGCTGAACAGAATGCCCGAAAAGTATCCTTGGAAAAGCAAAGAATTGTTGATGCTCTAATCTCTTCTGATAAAAGGTACAGAAGGTATACTGGGGAGGAAATAGAAATTGCAACGGATTTCTTCAGCGAGAGTAATATGATTGGTCAGGGAGGATATGGGAAGGTTTATAAATGCTATCTTGACGGTACACTAGTGGCTGTTAAGGTTCTTCAACCTGGTGAATTTGACAAGAAAAATGAGTTTCTGAAAGAGGTTGAAGTTTTAAGCCAAATACGCCATCCACACTTGGTTTTACTCCTCGGAGCTTGTCCAGAGAGAGGTTGTCTGGTTTATGAATTCTTGGAAAATGGAAGTCTGGACGAATATATCTTGCAGCAGAGGAGGAAACCACCACTGCCGTGGCTTGTTAGACTCAGGATAATTCATCAAGTAGCTTGTGGACTTTCTTTCTTACATAACTCGAAGCCGGAACCTATAATACATCGAGATCTAAAGCCGGGAAATATCTTGTTGGACAGAAACTATGTTGTCAAAATTGCAGATGTTGGACTGGCTAAAATCACTGGAGAGATAGTGCCTGATAATATAACAGAATATAAAAATTCTATTATATTTGGTACACTTCACTACATGGACCCCGAGTATCAGAGAACTGGCACGGTTCGTCCAAAATCTGATTTATATGCTTTTGGTGTAATAGTTCTCCAAATGTTGGCAGCCCGTCGTCCTCACGGCTTAATTTTAGCGGTAGAGAATGCTATTTCAAGTGGGTCCTTGGCAGATATTTTAGATAAGTCAGTTTCAGATTGGCCTCTTTCTGAAACAGAAGAATTGGCCAAAATTGCTTTGGGATGCACAAAGCTTAGATGCAGGGATCGGCCTGATTTGGACGCAGAGGTTATGCCCATCCTCAATACAATTTTGAACGTTGCAGAGTTTAGTCATAAAATTCTCAGCAACTCTGGATATGTCCCAAGCCATTACCTCTGTCCAATCCTTCAGGAAGTAATGGAGGATCCACACATTGCTGCCGACGGGTTTACCTACGAATACGAGGCGATAAAGGCGTGGCTGGATAGACATAAAGTATCACCAGTGACAAAGCTTAGACTTCAGCATTCTATGGTAACACCAAATCACACTTTAAGATCTGCCATACAAGAATGGAAGTCGTCTTTGAAACTTCCCTACGCTCAGTTTGGATAA 2229 42.62 MSDPGDFSATAVRTVMVAVNGVPGRSSGGGSRRAVQWTVENLLPGAGRLLLVHVMPKITSIPTPLGDGVPVSALDANVVALYTHDMKEKFDQIFVPFKKLCRKTKVETLVLEDDNPATALVRYISASDIKTLVLGSCSSNFMTRKLKGPGVPTTVLRNAPNSCNIFIISKRRIIKRTTSSSPTNETDSQQCIPSESNYEVGADRFCSSSAESEGSNRTVYSERIHDDLENKREIDSSKLDFAAFETEQVDMQREIESLQLDLENTVAMYKRACEELVHTQNKAHSLSSECHEETRRVKSAMEREEDLRKIAAEEKAKHLEAMEALEEAKVLLAKEAYERQLAEQNARKVSLEKQRIVDALISSDKRYRRYTGEEIEIATDFFSESNMIGQGGYGKVYKCYLDGTLVAVKVLQPGEFDKKNEFLKEVEVLSQIRHPHLVLLLGACPERGCLVYEFLENGSLDEYILQQRRKPPLPWLVRLRIIHQVACGLSFLHNSKPEPIIHRDLKPGNILLDRNYVVKIADVGLAKITGEIVPDNITEYKNSIIFGTLHYMDPEYQRTGTVRPKSDLYAFGVIVLQMLAARRPHGLILAVENAISSGSLADILDKSVSDWPLSETEELAKIALGCTKLRCRDRPDLDAEVMPILNTILNVAEFSHKILSNSGYVPSHYLCPILQEVMEDPHIAADGFTYEYEAIKAWLDRHKVSPVTKLRLQHSMVTPNHTLRSAIQEWKSSLKLPYAQFG 742
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 43637515 43641530 - Bma023940.1 Bma06g00882 84384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00882 742 SUPERFAMILY Protein kinase-like (PK-like) 365 637 IPR011009 -
Bma06g00882 742 PANTHER OS02G0152300 PROTEIN 211 733 - -
Bma06g00882 742 PANTHER OS02G0152300 PROTEIN 14 204 - -
Bma06g00882 742 Coils Coil 308 354 - -
Bma06g00882 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 160 - -
Bma06g00882 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 14 204 - -
Bma06g00882 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 211 733 - -
Bma06g00882 742 Gene3D HUPs 10 178 IPR014729 -
Bma06g00882 742 Gene3D Transferase(Phosphotransferase) domain 1 455 661 - -
Bma06g00882 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Bma06g00882 742 SMART serkin_6 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00882 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 736 IPR013083 -
Bma06g00882 742 Gene3D Phosphorylase Kinase; domain 1 361 454 - -
Bma06g00882 742 SUPERFAMILY RING/U-box 663 735 - -
Bma06g00882 742 Pfam Protein tyrosine and serine/threonine kinase 385 638 IPR001245 GO:0004672|GO:0006468
Bma06g00882 742 Pfam U-box domain 665 732 IPR003613 GO:0004842|GO:0016567
Bma06g00882 742 ProSiteProfiles U-box domain profile. 664 737 IPR003613 GO:0004842|GO:0016567
Bma06g00882 742 CDD STK_N 14 170 - -
Bma06g00882 742 SMART Ubox_2 668 730 IPR003613 GO:0004842|GO:0016567
Bma06g00882 742 CDD RING-Ubox_WDSUB1_like 669 709 - -
Bma06g00882 742 ProSiteProfiles Protein kinase domain profile. 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00882 742 ProSitePatterns Protein kinases ATP-binding region signature. 388 409 IPR017441 GO:0005524
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00882 Bma-Chr6:43637515 Bma09g00971 Bma-Chr9:49228083 1.43E-122 dispersed
Bma10g01235 Bma-Chr10:43916952 Bma06g00882 Bma-Chr6:43637515 6.27E-88 dispersed
Bma06g00882 Bma-Chr6:43637515 Bma06g00885 Bma-Chr6:43733074 0 proximal
Bma06g00882 Bma-Chr6:43637515 Bma06g00886 Bma-Chr6:43740196 2.52E-97 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66550 PF07714 PK_Tyr_Ser-Thr 6.10E-41 CL0016 Bma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00882 - - cpep:111805862 923.309