Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00882 ATGAGCGACCCCGGTGATTTTTCAGCTACAGCAGTTAGGACAGTTATGGTGGCAGTTAACGGTGTTCCCGGCCGAAGCAGTGGCGGCGGAAGCCGACGCGCGGTCCAATGGACCGTGGAGAATCTCTTGCCCGGTGCTGGTCGTCTCCTCTTAGTTCATGTCATGCCCAAAATTACTTCGATTCCCACTCCATTGGGAGATGGAGTCCCCGTTTCGGCTCTTGATGCGAACGTGGTTGCTCTTTATACGCACGACATGAAAGAGAAATTCGATCAAATTTTTGTCCCGTTTAAGAAGCTTTGCAGGAAAACCAAAGTTGAAACTCTGGTGCTTGAAGATGACAACCCAGCTACAGCGCTTGTAAGATATATATCTGCGTCTGATATCAAAACATTGGTGTTGGGTTCTTGTTCTTCAAATTTCATGACAAGGAAGCTTAAAGGACCTGGAGTACCAACGACAGTTCTGAGAAATGCTCCAAATAGTTGTAATATCTTCATTATATCAAAGCGTAGAATCATTAAAAGAACCACAAGTTCCTCGCCAACCAATGAGACCGATTCTCAGCAGTGCATACCGAGTGAAAGTAACTACGAAGTAGGTGCTGATAGGTTCTGTTCTTCATCTGCGGAATCAGAAGGCAGTAACAGAACTGTATATTCAGAAAGGATTCATGATGACTTGGAAAACAAACGAGAGATTGATTCTAGTAAATTAGATTTCGCAGCCTTCGAAACTGAGCAGGTAGATATGCAGCGTGAGATTGAGTCACTGCAGCTAGATTTAGAAAACACTGTTGCCATGTATAAACGTGCTTGTGAAGAACTGGTCCATACCCAGAATAAGGCGCATTCACTTTCCTCTGAATGCCATGAAGAAACAAGAAGAGTGAAATCTGCCATGGAAAGAGAAGAAGATTTGAGGAAAATTGCAGCTGAAGAAAAAGCTAAGCATTTAGAAGCCATGGAGGCACTAGAGGAAGCAAAAGTTTTACTGGCTAAAGAGGCATATGAGAGGCAGTTGGCTGAACAGAATGCCCGAAAAGTATCCTTGGAAAAGCAAAGAATTGTTGATGCTCTAATCTCTTCTGATAAAAGGTACAGAAGGTATACTGGGGAGGAAATAGAAATTGCAACGGATTTCTTCAGCGAGAGTAATATGATTGGTCAGGGAGGATATGGGAAGGTTTATAAATGCTATCTTGACGGTACACTAGTGGCTGTTAAGGTTCTTCAACCTGGTGAATTTGACAAGAAAAATGAGTTTCTGAAAGAGGTTGAAGTTTTAAGCCAAATACGCCATCCACACTTGGTTTTACTCCTCGGAGCTTGTCCAGAGAGAGGTTGTCTGGTTTATGAATTCTTGGAAAATGGAAGTCTGGACGAATATATCTTGCAGCAGAGGAGGAAACCACCACTGCCGTGGCTTGTTAGACTCAGGATAATTCATCAAGTAGCTTGTGGACTTTCTTTCTTACATAACTCGAAGCCGGAACCTATAATACATCGAGATCTAAAGCCGGGAAATATCTTGTTGGACAGAAACTATGTTGTCAAAATTGCAGATGTTGGACTGGCTAAAATCACTGGAGAGATAGTGCCTGATAATATAACAGAATATAAAAATTCTATTATATTTGGTACACTTCACTACATGGACCCCGAGTATCAGAGAACTGGCACGGTTCGTCCAAAATCTGATTTATATGCTTTTGGTGTAATAGTTCTCCAAATGTTGGCAGCCCGTCGTCCTCACGGCTTAATTTTAGCGGTAGAGAATGCTATTTCAAGTGGGTCCTTGGCAGATATTTTAGATAAGTCAGTTTCAGATTGGCCTCTTTCTGAAACAGAAGAATTGGCCAAAATTGCTTTGGGATGCACAAAGCTTAGATGCAGGGATCGGCCTGATTTGGACGCAGAGGTTATGCCCATCCTCAATACAATTTTGAACGTTGCAGAGTTTAGTCATAAAATTCTCAGCAACTCTGGATATGTCCCAAGCCATTACCTCTGTCCAATCCTTCAGGAAGTAATGGAGGATCCACACATTGCTGCCGACGGGTTTACCTACGAATACGAGGCGATAAAGGCGTGGCTGGATAGACATAAAGTATCACCAGTGACAAAGCTTAGACTTCAGCATTCTATGGTAACACCAAATCACACTTTAAGATCTGCCATACAAGAATGGAAGTCGTCTTTGAAACTTCCCTACGCTCAGTTTGGATAA 2229 42.62 MSDPGDFSATAVRTVMVAVNGVPGRSSGGGSRRAVQWTVENLLPGAGRLLLVHVMPKITSIPTPLGDGVPVSALDANVVALYTHDMKEKFDQIFVPFKKLCRKTKVETLVLEDDNPATALVRYISASDIKTLVLGSCSSNFMTRKLKGPGVPTTVLRNAPNSCNIFIISKRRIIKRTTSSSPTNETDSQQCIPSESNYEVGADRFCSSSAESEGSNRTVYSERIHDDLENKREIDSSKLDFAAFETEQVDMQREIESLQLDLENTVAMYKRACEELVHTQNKAHSLSSECHEETRRVKSAMEREEDLRKIAAEEKAKHLEAMEALEEAKVLLAKEAYERQLAEQNARKVSLEKQRIVDALISSDKRYRRYTGEEIEIATDFFSESNMIGQGGYGKVYKCYLDGTLVAVKVLQPGEFDKKNEFLKEVEVLSQIRHPHLVLLLGACPERGCLVYEFLENGSLDEYILQQRRKPPLPWLVRLRIIHQVACGLSFLHNSKPEPIIHRDLKPGNILLDRNYVVKIADVGLAKITGEIVPDNITEYKNSIIFGTLHYMDPEYQRTGTVRPKSDLYAFGVIVLQMLAARRPHGLILAVENAISSGSLADILDKSVSDWPLSETEELAKIALGCTKLRCRDRPDLDAEVMPILNTILNVAEFSHKILSNSGYVPSHYLCPILQEVMEDPHIAADGFTYEYEAIKAWLDRHKVSPVTKLRLQHSMVTPNHTLRSAIQEWKSSLKLPYAQFG 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43637515 43641530 - Bma023940.1 Bma06g00882 84384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00882 742 SUPERFAMILY Protein kinase-like (PK-like) 365 637 IPR011009 -
Bma06g00882 742 PANTHER OS02G0152300 PROTEIN 211 733 - -
Bma06g00882 742 PANTHER OS02G0152300 PROTEIN 14 204 - -
Bma06g00882 742 Coils Coil 308 354 - -
Bma06g00882 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 160 - -
Bma06g00882 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 14 204 - -
Bma06g00882 742 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 211 733 - -
Bma06g00882 742 Gene3D HUPs 10 178 IPR014729 -
Bma06g00882 742 Gene3D Transferase(Phosphotransferase) domain 1 455 661 - -
Bma06g00882 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Bma06g00882 742 SMART serkin_6 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00882 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 736 IPR013083 -
Bma06g00882 742 Gene3D Phosphorylase Kinase; domain 1 361 454 - -
Bma06g00882 742 SUPERFAMILY RING/U-box 663 735 - -
Bma06g00882 742 Pfam Protein tyrosine and serine/threonine kinase 385 638 IPR001245 GO:0004672|GO:0006468
Bma06g00882 742 Pfam U-box domain 665 732 IPR003613 GO:0004842|GO:0016567
Bma06g00882 742 ProSiteProfiles U-box domain profile. 664 737 IPR003613 GO:0004842|GO:0016567
Bma06g00882 742 CDD STK_N 14 170 - -
Bma06g00882 742 SMART Ubox_2 668 730 IPR003613 GO:0004842|GO:0016567
Bma06g00882 742 CDD RING-Ubox_WDSUB1_like 669 709 - -
Bma06g00882 742 ProSiteProfiles Protein kinase domain profile. 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00882 742 ProSitePatterns Protein kinases ATP-binding region signature. 388 409 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00882 - - - cpep:111805862 923.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00882 Bma-Chr6:43637515 Bma09g00971 Bma-Chr9:49228083 1.43E-122 dispersed
Bma10g01235 Bma-Chr10:43916952 Bma06g00882 Bma-Chr6:43637515 6.27E-88 dispersed
Bma06g00882 Bma-Chr6:43637515 Bma06g00885 Bma-Chr6:43733074 0 proximal
Bma06g00882 Bma-Chr6:43637515 Bma06g00886 Bma-Chr6:43740196 2.52E-97 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g145 . Blo16g00977 Bda01g01340 Bda11g01037 . . . . . . Cma05g01403 Cma12g00651 Car05g01319 Car12g00600 . . . . . . . . . . Cla11g00152 . . . . . . . . . . . Csa02g00037 Chy05g01451 . . . . . . Bpe13g01247 . Bma06g00882 . Cmo05g01403 Cmo12g00590 . . . . Cpe11g01178 . Bhi06g01630 . . . . . . . . . . . . . Lsi11g00178 . . Cme05g02054
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00882 . 9 736 Plant U-box Gene Family AT5G57035 51.3 6.7e-212 734.2
Bma06g00885 . 1 310 Plant U-box Gene Family AT5G57035 66.1 1.4e-116 417.5
Bma08g01047 . 206 441 Plant U-box Gene Family AT5G05230 56.7 2.3e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66550 PF07714 PK_Tyr_Ser-Thr 6.10E-41 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00882 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 1.582661 0.0 0.0 0.0 0.0 0.0