Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma06g00882 | ATGAGCGACCCCGGTGATTTTTCAGCTACAGCAGTTAGGACAGTTATGGTGGCAGTTAACGGTGTTCCCGGCCGAAGCAGTGGCGGCGGAAGCCGACGCGCGGTCCAATGGACCGTGGAGAATCTCTTGCCCGGTGCTGGTCGTCTCCTCTTAGTTCATGTCATGCCCAAAATTACTTCGATTCCCACTCCATTGGGAGATGGAGTCCCCGTTTCGGCTCTTGATGCGAACGTGGTTGCTCTTTATACGCACGACATGAAAGAGAAATTCGATCAAATTTTTGTCCCGTTTAAGAAGCTTTGCAGGAAAACCAAAGTTGAAACTCTGGTGCTTGAAGATGACAACCCAGCTACAGCGCTTGTAAGATATATATCTGCGTCTGATATCAAAACATTGGTGTTGGGTTCTTGTTCTTCAAATTTCATGACAAGGAAGCTTAAAGGACCTGGAGTACCAACGACAGTTCTGAGAAATGCTCCAAATAGTTGTAATATCTTCATTATATCAAAGCGTAGAATCATTAAAAGAACCACAAGTTCCTCGCCAACCAATGAGACCGATTCTCAGCAGTGCATACCGAGTGAAAGTAACTACGAAGTAGGTGCTGATAGGTTCTGTTCTTCATCTGCGGAATCAGAAGGCAGTAACAGAACTGTATATTCAGAAAGGATTCATGATGACTTGGAAAACAAACGAGAGATTGATTCTAGTAAATTAGATTTCGCAGCCTTCGAAACTGAGCAGGTAGATATGCAGCGTGAGATTGAGTCACTGCAGCTAGATTTAGAAAACACTGTTGCCATGTATAAACGTGCTTGTGAAGAACTGGTCCATACCCAGAATAAGGCGCATTCACTTTCCTCTGAATGCCATGAAGAAACAAGAAGAGTGAAATCTGCCATGGAAAGAGAAGAAGATTTGAGGAAAATTGCAGCTGAAGAAAAAGCTAAGCATTTAGAAGCCATGGAGGCACTAGAGGAAGCAAAAGTTTTACTGGCTAAAGAGGCATATGAGAGGCAGTTGGCTGAACAGAATGCCCGAAAAGTATCCTTGGAAAAGCAAAGAATTGTTGATGCTCTAATCTCTTCTGATAAAAGGTACAGAAGGTATACTGGGGAGGAAATAGAAATTGCAACGGATTTCTTCAGCGAGAGTAATATGATTGGTCAGGGAGGATATGGGAAGGTTTATAAATGCTATCTTGACGGTACACTAGTGGCTGTTAAGGTTCTTCAACCTGGTGAATTTGACAAGAAAAATGAGTTTCTGAAAGAGGTTGAAGTTTTAAGCCAAATACGCCATCCACACTTGGTTTTACTCCTCGGAGCTTGTCCAGAGAGAGGTTGTCTGGTTTATGAATTCTTGGAAAATGGAAGTCTGGACGAATATATCTTGCAGCAGAGGAGGAAACCACCACTGCCGTGGCTTGTTAGACTCAGGATAATTCATCAAGTAGCTTGTGGACTTTCTTTCTTACATAACTCGAAGCCGGAACCTATAATACATCGAGATCTAAAGCCGGGAAATATCTTGTTGGACAGAAACTATGTTGTCAAAATTGCAGATGTTGGACTGGCTAAAATCACTGGAGAGATAGTGCCTGATAATATAACAGAATATAAAAATTCTATTATATTTGGTACACTTCACTACATGGACCCCGAGTATCAGAGAACTGGCACGGTTCGTCCAAAATCTGATTTATATGCTTTTGGTGTAATAGTTCTCCAAATGTTGGCAGCCCGTCGTCCTCACGGCTTAATTTTAGCGGTAGAGAATGCTATTTCAAGTGGGTCCTTGGCAGATATTTTAGATAAGTCAGTTTCAGATTGGCCTCTTTCTGAAACAGAAGAATTGGCCAAAATTGCTTTGGGATGCACAAAGCTTAGATGCAGGGATCGGCCTGATTTGGACGCAGAGGTTATGCCCATCCTCAATACAATTTTGAACGTTGCAGAGTTTAGTCATAAAATTCTCAGCAACTCTGGATATGTCCCAAGCCATTACCTCTGTCCAATCCTTCAGGAAGTAATGGAGGATCCACACATTGCTGCCGACGGGTTTACCTACGAATACGAGGCGATAAAGGCGTGGCTGGATAGACATAAAGTATCACCAGTGACAAAGCTTAGACTTCAGCATTCTATGGTAACACCAAATCACACTTTAAGATCTGCCATACAAGAATGGAAGTCGTCTTTGAAACTTCCCTACGCTCAGTTTGGATAA | 2229 | 42.62 | MSDPGDFSATAVRTVMVAVNGVPGRSSGGGSRRAVQWTVENLLPGAGRLLLVHVMPKITSIPTPLGDGVPVSALDANVVALYTHDMKEKFDQIFVPFKKLCRKTKVETLVLEDDNPATALVRYISASDIKTLVLGSCSSNFMTRKLKGPGVPTTVLRNAPNSCNIFIISKRRIIKRTTSSSPTNETDSQQCIPSESNYEVGADRFCSSSAESEGSNRTVYSERIHDDLENKREIDSSKLDFAAFETEQVDMQREIESLQLDLENTVAMYKRACEELVHTQNKAHSLSSECHEETRRVKSAMEREEDLRKIAAEEKAKHLEAMEALEEAKVLLAKEAYERQLAEQNARKVSLEKQRIVDALISSDKRYRRYTGEEIEIATDFFSESNMIGQGGYGKVYKCYLDGTLVAVKVLQPGEFDKKNEFLKEVEVLSQIRHPHLVLLLGACPERGCLVYEFLENGSLDEYILQQRRKPPLPWLVRLRIIHQVACGLSFLHNSKPEPIIHRDLKPGNILLDRNYVVKIADVGLAKITGEIVPDNITEYKNSIIFGTLHYMDPEYQRTGTVRPKSDLYAFGVIVLQMLAARRPHGLILAVENAISSGSLADILDKSVSDWPLSETEELAKIALGCTKLRCRDRPDLDAEVMPILNTILNVAEFSHKILSNSGYVPSHYLCPILQEVMEDPHIAADGFTYEYEAIKAWLDRHKVSPVTKLRLQHSMVTPNHTLRSAIQEWKSSLKLPYAQFG | 742 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43637515 | 43641530 | - | Bma023940.1 | Bma06g00882 | 84384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma06g00882 | 742 | SUPERFAMILY | Protein kinase-like (PK-like) | 365 | 637 | IPR011009 | - | |
Bma06g00882 | 742 | PANTHER | OS02G0152300 PROTEIN | 211 | 733 | - | - | |
Bma06g00882 | 742 | PANTHER | OS02G0152300 PROTEIN | 14 | 204 | - | - | |
Bma06g00882 | 742 | Coils | Coil | 308 | 354 | - | - | |
Bma06g00882 | 742 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 13 | 160 | - | - | |
Bma06g00882 | 742 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 34 | 14 | 204 | - | - | |
Bma06g00882 | 742 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 34 | 211 | 733 | - | - | |
Bma06g00882 | 742 | Gene3D | HUPs | 10 | 178 | IPR014729 | - | |
Bma06g00882 | 742 | Gene3D | Transferase(Phosphotransferase) domain 1 | 455 | 661 | - | - | |
Bma06g00882 | 742 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 500 | 512 | IPR008271 | GO:0004672|GO:0006468 | |
Bma06g00882 | 742 | SMART | serkin_6 | 382 | 645 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma06g00882 | 742 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 664 | 736 | IPR013083 | - | |
Bma06g00882 | 742 | Gene3D | Phosphorylase Kinase; domain 1 | 361 | 454 | - | - | |
Bma06g00882 | 742 | SUPERFAMILY | RING/U-box | 663 | 735 | - | - | |
Bma06g00882 | 742 | Pfam | Protein tyrosine and serine/threonine kinase | 385 | 638 | IPR001245 | GO:0004672|GO:0006468 | |
Bma06g00882 | 742 | Pfam | U-box domain | 665 | 732 | IPR003613 | GO:0004842|GO:0016567 | |
Bma06g00882 | 742 | ProSiteProfiles | U-box domain profile. | 664 | 737 | IPR003613 | GO:0004842|GO:0016567 | |
Bma06g00882 | 742 | CDD | STK_N | 14 | 170 | - | - | |
Bma06g00882 | 742 | SMART | Ubox_2 | 668 | 730 | IPR003613 | GO:0004842|GO:0016567 | |
Bma06g00882 | 742 | CDD | RING-Ubox_WDSUB1_like | 669 | 709 | - | - | |
Bma06g00882 | 742 | ProSiteProfiles | Protein kinase domain profile. | 382 | 645 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma06g00882 | 742 | ProSitePatterns | Protein kinases ATP-binding region signature. | 388 | 409 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00882 | Bma-Chr6:43637515 | Bma09g00971 | Bma-Chr9:49228083 | 1.43E-122 | dispersed | |
Bma10g01235 | Bma-Chr10:43916952 | Bma06g00882 | Bma-Chr6:43637515 | 6.27E-88 | dispersed | |
Bma06g00882 | Bma-Chr6:43637515 | Bma06g00885 | Bma-Chr6:43733074 | 0 | proximal | |
Bma06g00882 | Bma-Chr6:43637515 | Bma06g00886 | Bma-Chr6:43740196 | 2.52E-97 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66550 | PF07714 | PK_Tyr_Ser-Thr | 6.10E-41 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma06g00882 | - | - | cpep:111805862 | 923.309 |