Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00890 ATGGACGGAGCCGCAGGCTACAACCCCCGAACTGTCGAAGAGGTTTTCAGAGACTTCAAGGGTCGTCAAGCCGGCATGATCAAAGCTCTCACCGCAGACGTCGAAGAATTTTATCAACAGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGGAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCCCCCGAGCTGCCGGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCTTGGTTACTTTCAGTGGCTTTCTATTTTGGTTCCAGATTTGGTTTTGATAAAGCTAACAGGAAACGTCTGTTCACTATGATAAATGATGTCCCCACAATATTTGAGACAGTGACCGGAAGTGTGAAGAAACAAGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGTAATAAATCTAAGTCAGGCTCAAAAGGGAGAGGCTCTGAATCTAGCGATGTACCGAAGGAGACGTCGAAAGAAGAGGATGAAGAATTTGAAGAAGAAGAAGAGGCGGAGGAAGACCATGGGGTTACCTTATGTGGGGCCTGCAAAGAGAGTTACACAACCAACGAGTTCTGGATTTGCTGTGACATTTGTGAGAAGTGGTTTCATGGCAAGTGCGTGAAGATAACTCCGGCAAGAGCCGAACACATCAAACAATATAAGTGCCCTTCGTGCAGCAACAAGAGAGGTCGACAT 759 45.98 MDGAAGYNPRTVEEVFRDFKGRQAGMIKALTADVEEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKANRKRLFTMINDVPTIFETVTGSVKKQGKEKSSISNHSSNKSKSGSKGRGSESSDVPKETSKEEDEEFEEEEEAEEDHGVTLCGACKESYTTNEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRGRH 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43804599 43807164 + Bma031297 Bma06g00890 84392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00890 253 SUPERFAMILY FYVE/PHD zinc finger 189 251 IPR011011 -
Bma06g00890 253 SMART PHD_3 199 247 IPR001965 -
Bma06g00890 253 Pfam PHD-finger 200 249 IPR019787 -
Bma06g00890 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Bma06g00890 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Bma06g00890 253 CDD PHD_AL_plant 199 249 IPR044104 -
Bma06g00890 253 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bma06g00890 253 MobiDBLite consensus disorder prediction 144 168 - -
Bma06g00890 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Bma06g00890 253 MobiDBLite consensus disorder prediction 144 193 - -
Bma06g00890 253 MobiDBLite consensus disorder prediction 179 193 - -
Bma06g00890 253 PANTHER CPG BINDING PROTEIN 2 252 IPR045104 GO:0006355|GO:0042393
Bma06g00890 253 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3 2 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00716 Bma-Chr4:7308242 Bma06g00890 Bma-Chr6:43804599 3.44E-68 dispersed
Bma06g00890 Bma-Chr6:43804599 Bma08g01024 Bma-Chr8:49360028 1.15E-96 dispersed
Bma02g00545 Bma-Chr2:11058348 Bma06g00890 Bma-Chr6:43804599 6.26E-118 transposed
Bma11g00599 Bma-Chr11:8956353 Bma06g00890 Bma-Chr6:43804599 1.22E-77 transposed
Bma01g00252 Bma-Chr1:2166370 Bma06g00890 Bma-Chr6:43804599 1.54E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57487 PF12165 Alfin 2.30E-68 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00890 - - cpap:110817645 406.371