Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00893 ATGATGAAGAACGAAGCACCAGCACGCATCATTCCTATTTCAGCATTAAATCCTTATCAGGGCCGCTGGGCTGTAAAGGCAAGAGTTACAGCAAAAGGTGATCTCCGTCGCTACAATAATGCCCGAGGAGATGGTAAGGTATTTTCATTTGACCTTCTGGACTCTGATGGAGGAGAAATTAGAGTGACCTGTTTCAATGCTGTTGTTGATCGTTTCTATGAGCTTATAGAGGTTGGCAAGGTTTATTTAGTTTCAAAAGGCAATTTGAAGCCCGCCCAGAAGAACTTTAATCATTTGAAGAATGAATGGGAGATATTTTTGGAGGCAACTTCTACTGTGGATCTTTCCCCAGATGAAGATGGCTCTATACCGAGACAACAATTTTCTTTCAGACCTATCAGTGAAATTGAGAATGTTGAAAACAATACTATACTTGATGTGATTGGTATTGTGATATCTGTGAACCCTTCGGTTCCTATATTAAGAAAGAATGGTATGGAAACACAGAGAAGAATTCTTAATTTAAAAGATCCATCAGGCAGGATTGTTGAGCTAACCTTGTGGGGAGAATTTTGCAATAGAGAAGGTCAACGACTTCAGGATTTGGTTGATTCTGAGGTGTTTCCAGTTCTAGCTGTCAAAGCTGGGAAGGTAAATGACTTCACTGGTAAATCTATAGGAACTATTTCTGCGACACAGCTCTTTATAGACCCTGATTTTCGAGAGGCTCATATCTTAAGAGATTGGTACGAACAAGGAGGTAAGAATGCATCTTCTTTGTCTATTTCTAAAGAAATTATGCCTGGAGGATCTAAGAATGAGATGAGGAAGACTGTATCTCAAATAAAAGATGAAGGTCTTGGAAGATCTGATAAGCCTGACTGGATCACTGTGAAGGCAACCATATCTTTTATTAAAACTGACTCATTCTGTTATACTGCGTGCCCATTGATGATTGGAGATCGACAATGCAGCAAGAAAGTAACGAGGTTAGGAGACGCAAGATGGCAATGCGATAGGTGCAATCAGGACTTCGAGGAGTGTGATTACAGATATCTTCTTCAGGCTCAAATTCAAGACCATTCAGGATTGACTTGGGTGACTGCTTTTCAAGAAGCTGGGGAAGAAATATTAGGTGTGTCTGCTAAGGAGTTATACTTGTTGAAGTATGAAGAACAGGATGACACCAAGTTTGGAGAAATAATCCAGAGCAGAATTTTCACCCAATTCATGTTTAGGCTTAAAATCAAAGAGGAGATGTATAGCGATGAACAGAGGATGAAAATTACTGTTGTGAAGGCCGATAGAGTGGACTACCAATCAGAGAGCAAATACATGCTGGATTTTATTTCAAAAATTTCTAGGTGA 1368 39.69 MMKNEAPARIIPISALNPYQGRWAVKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYELIEVGKVYLVSKGNLKPAQKNFNHLKNEWEIFLEATSTVDLSPDEDGSIPRQQFSFRPISEIENVENNTILDVIGIVISVNPSVPILRKNGMETQRRILNLKDPSGRIVELTLWGEFCNREGQRLQDLVDSEVFPVLAVKAGKVNDFTGKSIGTISATQLFIDPDFREAHILRDWYEQGGKNASSLSISKEIMPGGSKNEMRKTVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCSKKVTRLGDARWQCDRCNQDFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEILGVSAKELYLLKYEEQDDTKFGEIIQSRIFTQFMFRLKIKEEMYSDEQRMKITVVKADRVDYQSESKYMLDFISKISR 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43815724 43817091 - Bma023952.1 Bma06g00893 84395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00893 455 Pfam Replication protein A OB domain 133 237 IPR031657 -
Bma06g00893 455 CDD RPA1_DBD_B 144 251 - -
Bma06g00893 455 Gene3D - 122 262 IPR012340 -
Bma06g00893 455 PANTHER REPLICATION FACTOR A 1, RFA1 3 450 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma06g00893 455 Gene3D - 8 118 IPR012340 -
Bma06g00893 455 Gene3D - 263 453 IPR012340 -
Bma06g00893 455 SUPERFAMILY Nucleic acid-binding proteins 276 452 IPR012340 -
Bma06g00893 455 Pfam Replication factor-A C terminal domain 295 446 IPR013955 -
Bma06g00893 455 SUPERFAMILY Nucleic acid-binding proteins 127 258 IPR012340 -
Bma06g00893 455 Pfam OB-fold nucleic acid binding domain 24 105 IPR004365 GO:0003676
Bma06g00893 455 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 3 450 - -
Bma06g00893 455 SUPERFAMILY Nucleic acid-binding proteins 9 122 IPR012340 -
Bma06g00893 455 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 452 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bma06g00893 455 CDD RPA1_DBD_C 279 452 IPR013955 -
Bma06g00893 455 CDD RPA1_DBD_A 12 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00893 Bma-Chr6:43815724 Bma12g00964 Bma-Chr12:41612761 3.56E-84 dispersed
Bma12g00253 Bma-Chr12:3252412 Bma06g00893 Bma-Chr6:43815724 0 transposed
Bma01g00254 Bma-Chr1:2174781 Bma06g00893 Bma-Chr6:43815724 1.99E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00893 K07466 - vvi:100268119 795.038