Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00924 ATGGTTATGGGTATTGCAGCGAAGCCATGCGACTCCTGCAAATTGGCGCCGGCAGTTTTGTTTTGTCGGAGTGATGTCGTTTTCCTCTGCCTAAGATGTGATGCAGATATTCACAAGCTTGGCCTTCGGCACGAGCGTGTCTGGATGTGTGAGGTCTGCGAGCAAGCTCCGGCTGTCGTTACCTGCAAAGCCGATGCTGCCACTCTCTGCGTCACATGCGACGCGGATATCCACTCCGCCAATCCTCTCGCCCGCCGCCACGAGCGGGTCCCCGTGGGGTCGTTTTTCAACTCAGCCGAGTCGATGGTAAAGTCGTCTTCTGCAGCCTTCAACTTCCTTGTTACTCATGGAGCTGATATTGGAGTCGCTGACGGTGGCCGGAAGGACAACGGTGAGGCGGCGTCTAGGCTTCTCAACTCGAAGCTAATGGAGGGAGAGCAATTGAAGTCTGAAGATATGTTTTTCTCGGAAATGGACTCGTTTATCGATTTTGAATATTCCAATCCAATCACCGGAAATGACAGCGTCGTTCCTGTTCAGACTAAGCAAATATCGGCAGCGGCGATCAATCATTCCAATGAAAACTGTTTCGATATCGACTTCTGCCGATCCAAACTGAACTCATTTAGCTACCCATCTCACACAATAAGCCATAGCATTTCTTCTTCGTCCTTAGATGTCGGAATTGTTCCAGACGGGGGAAACTCTTTCTCCGAAATATCGCATTCTTTCGGCCGCAATGTTGTCGAACCGTGGATATCGGTGTCTGCGACGACGGAACAGGCGGTGCCGCTGTGTGGATTAGATCGGGAGGCGAAGGTTTTAAGGTACAAAGAGAAGAAGAAGAACCGGAGGTTCGAGAAAACTATACGCTACGCCTCAAGAAAGGCTTACGCAGAAACTCGGCCGAGAATTAAAGGCCGATTTGCTAAGCGAAACGACTTCCACTCCGACGTCGACCGAATGTACAGTTCGGTTTCGGCTAATTTCCACGCCGAACATCAATACGGCATCGTTCCGTCATTTTGA 1029 50.53 MVMGIAAKPCDSCKLAPAVLFCRSDVVFLCLRCDADIHKLGLRHERVWMCEVCEQAPAVVTCKADAATLCVTCDADIHSANPLARRHERVPVGSFFNSAESMVKSSSAAFNFLVTHGADIGVADGGRKDNGEAASRLLNSKLMEGEQLKSEDMFFSEMDSFIDFEYSNPITGNDSVVPVQTKQISAAAINHSNENCFDIDFCRSKLNSFSYPSHTISHSISSSSLDVGIVPDGGNSFSEISHSFGRNVVEPWISVSATTEQAVPLCGLDREAKVLRYKEKKKNRRFEKTIRYASRKAYAETRPRIKGRFAKRNDFHSDVDRMYSSVSANFHAEHQYGIVPSF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44829716 44830831 + Bma023990.1 Bma06g00924 84426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00924 342 Pfam CCT motif 270 312 IPR010402 GO:0005515
Bma06g00924 342 CDD Bbox1_BBX-like 9 49 - -
Bma06g00924 342 ProSiteProfiles Zinc finger B-box type profile. 5 49 IPR000315 GO:0008270
Bma06g00924 342 SMART bboxneu5 5 49 IPR000315 GO:0008270
Bma06g00924 342 SMART bboxneu5 50 92 IPR000315 GO:0008270
Bma06g00924 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 342 IPR045281 GO:0009909
Bma06g00924 342 Pfam B-box zinc finger 8 47 IPR000315 GO:0008270
Bma06g00924 342 Pfam B-box zinc finger 47 92 IPR000315 GO:0008270
Bma06g00924 342 ProSiteProfiles Zinc finger B-box type profile. 45 92 IPR000315 GO:0008270
Bma06g00924 342 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Bma06g00924 342 CDD Bbox1_BBX-like 50 92 - -
Bma06g00924 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00924 - - - zju:107415202 419.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00353 Bma06g00924 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00924 Bma-Chr6:44829716 Bma06g01334 Bma-Chr6:50294261 7.86E-12 dispersed
Bma06g00924 Bma-Chr6:44829716 Bma06g00932 Bma-Chr6:45146901 0 proximal
Bma01g01259 Bma-Chr1:16771404 Bma06g00924 Bma-Chr6:44829716 5.02E-86 transposed
Bma02g00460 Bma-Chr2:7118414 Bma06g00924 Bma-Chr6:44829716 1.77E-70 transposed
Bma01g00353 Bma-Chr1:2903567 Bma06g00924 Bma-Chr6:44829716 1.14E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1077 . . . . . . . . Cmo10g00449 Cmo11g00414 Cma05g00679 . Car05g00623 . Sed08g0523 Cpe04g01287 Cpe18g00605 Bhi02g00794 Tan09g1648 Cmetu02g0351 . Hepe09g0511 . . Cla11g01201 Cam11g1260 Cec11g1272 Cco11g1273 Clacu11g1418 Cmu11g1240 Cre11g1658 . . Cone11ag0169 Cone18ag1317 Lsi06g01109 Csa02g00615 Chy05g00918 Cme02g01520 . . . Bda09g00945 Bpe08g00686 Bpe13g01202 Bma01g00353 Bma06g00924 Sed03g2846 Cmo05g00714 . Cma10g00418 Cma11g00415 Car10g00391 . Cpe11g00603 . Bhi06g01274 Tan08g0825 Cmetu05g0666 . Hepe08g2141 . . Cla06g01299 Cam06g1444 Cec06g1497 Cco06g1497 Clacu06g1404 Cmu06g1365 Cre06g2174 Lsi11g00747 Csa01g02115 Chy02g02191 Cme05g01392
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57493 PF00643 zf-B_box 1.90E-06 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00924 Bma_Chr06 FPKM 24.768148 25.220036 24.422344 27.33227 21.697695 16.627016 23.706917 23.6908 25.921482 29.180843