Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00924 ATGGTTATGGGTATTGCAGCGAAGCCATGCGACTCCTGCAAATTGGCGCCGGCAGTTTTGTTTTGTCGGAGTGATGTCGTTTTCCTCTGCCTAAGATGTGATGCAGATATTCACAAGCTTGGCCTTCGGCACGAGCGTGTCTGGATGTGTGAGGTCTGCGAGCAAGCTCCGGCTGTCGTTACCTGCAAAGCCGATGCTGCCACTCTCTGCGTCACATGCGACGCGGATATCCACTCCGCCAATCCTCTCGCCCGCCGCCACGAGCGGGTCCCCGTGGGGTCGTTTTTCAACTCAGCCGAGTCGATGGTAAAGTCGTCTTCTGCAGCCTTCAACTTCCTTGTTACTCATGGAGCTGATATTGGAGTCGCTGACGGTGGCCGGAAGGACAACGGTGAGGCGGCGTCTAGGCTTCTCAACTCGAAGCTAATGGAGGGAGAGCAATTGAAGTCTGAAGATATGTTTTTCTCGGAAATGGACTCGTTTATCGATTTTGAATATTCCAATCCAATCACCGGAAATGACAGCGTCGTTCCTGTTCAGACTAAGCAAATATCGGCAGCGGCGATCAATCATTCCAATGAAAACTGTTTCGATATCGACTTCTGCCGATCCAAACTGAACTCATTTAGCTACCCATCTCACACAATAAGCCATAGCATTTCTTCTTCGTCCTTAGATGTCGGAATTGTTCCAGACGGGGGAAACTCTTTCTCCGAAATATCGCATTCTTTCGGCCGCAATGTTGTCGAACCGTGGATATCGGTGTCTGCGACGACGGAACAGGCGGTGCCGCTGTGTGGATTAGATCGGGAGGCGAAGGTTTTAAGGTACAAAGAGAAGAAGAAGAACCGGAGGTTCGAGAAAACTATACGCTACGCCTCAAGAAAGGCTTACGCAGAAACTCGGCCGAGAATTAAAGGCCGATTTGCTAAGCGAAACGACTTCCACTCCGACGTCGACCGAATGTACAGTTCGGTTTCGGCTAATTTCCACGCCGAACATCAATACGGCATCGTTCCGTCATTTTGA 1029 50.53 MVMGIAAKPCDSCKLAPAVLFCRSDVVFLCLRCDADIHKLGLRHERVWMCEVCEQAPAVVTCKADAATLCVTCDADIHSANPLARRHERVPVGSFFNSAESMVKSSSAAFNFLVTHGADIGVADGGRKDNGEAASRLLNSKLMEGEQLKSEDMFFSEMDSFIDFEYSNPITGNDSVVPVQTKQISAAAINHSNENCFDIDFCRSKLNSFSYPSHTISHSISSSSLDVGIVPDGGNSFSEISHSFGRNVVEPWISVSATTEQAVPLCGLDREAKVLRYKEKKKNRRFEKTIRYASRKAYAETRPRIKGRFAKRNDFHSDVDRMYSSVSANFHAEHQYGIVPSF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44829716 44830831 + Bma023990.1 Bma06g00924 84426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00924 342 Pfam CCT motif 270 312 IPR010402 GO:0005515
Bma06g00924 342 CDD Bbox1_BBX-like 9 49 - -
Bma06g00924 342 ProSiteProfiles Zinc finger B-box type profile. 5 49 IPR000315 GO:0008270
Bma06g00924 342 SMART bboxneu5 5 49 IPR000315 GO:0008270
Bma06g00924 342 SMART bboxneu5 50 92 IPR000315 GO:0008270
Bma06g00924 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 342 IPR045281 GO:0009909
Bma06g00924 342 Pfam B-box zinc finger 8 47 IPR000315 GO:0008270
Bma06g00924 342 Pfam B-box zinc finger 47 92 IPR000315 GO:0008270
Bma06g00924 342 ProSiteProfiles Zinc finger B-box type profile. 45 92 IPR000315 GO:0008270
Bma06g00924 342 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Bma06g00924 342 CDD Bbox1_BBX-like 50 92 - -
Bma06g00924 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 342 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00353 Bma06g00924 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00924 Bma-Chr6:44829716 Bma06g01334 Bma-Chr6:50294261 7.86E-12 dispersed
Bma06g00924 Bma-Chr6:44829716 Bma06g00932 Bma-Chr6:45146901 0 proximal
Bma01g01259 Bma-Chr1:16771404 Bma06g00924 Bma-Chr6:44829716 5.02E-86 transposed
Bma02g00460 Bma-Chr2:7118414 Bma06g00924 Bma-Chr6:44829716 1.77E-70 transposed
Bma01g00353 Bma-Chr1:2903567 Bma06g00924 Bma-Chr6:44829716 1.14E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57493 PF00643 zf-B_box 1.90E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00924 - - zju:107415202 419.083