Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00932 ATGGTTATGGGTATTGCAGCGAAGCCATGCGACTCCTGCAAATTGGCGCCGGCGGTTTTGTTTTGTCGGAGTGACGTCGTTTTCCTCTGCCTTAGATGTGATGCAGACATTCACAAGCTTGGCCTCCGGCACGAGCGTGTCTGGATGTGTGAGGTCTGCGAGCAAGCTCCGGCTGTCGTTACCTGCAAAGCCGATGCTGCCACTCTCTGCGTCACATGCGACGCGGATATCCACTCCGCCAATCCTCTGGCCCGCCGCCACGAGCGGGTCCCCGTGGGGTCGTTTTTCAACTCAGCCGAGTCGATGGTAAAGTCGTCTTCTGCAGCCTTCAACTTCCTCGTTACTCATGGAGCTGATATTGGAGTCGCTGACGGTGGCCGGAAGGACAACGGTGAGGCGGCGTCTAGGCTTCTCAACTCGAAGCTAATGGAGGGAGAGCAATTGAAGTCTGAAGATATGTTTTTCTCGGAAATGGACTCGTTTATCGATTTTGAATATTCCAATCCAATCACCGGAAATGACAGCGTCGTTCCTGTTCAGACTAAGCAAATATCGGCGGCGGCGATCAATCATTCCAATGAAAACTGTTTCGATATCGACTTCTGCCGATCCAAACTGAACTCATTTAGCTACCCATCTCACACAATAAGCCATAGCATTTCTTCGTCGTCCTTAGATGTCGGAATTGTTCCAGACGGGGGAAACTCTTTCTCCGAAATATCGCATTCTTTCGGCCGCAATGTTGTCGAACCGTGGATATCGGTGTCTGCGACGACGGAACAGGCGGTGCCGCTGTGTGGATTAGATCGGGAGGCGAAGGTTTTAAGGTACAAAGAGAAGAAGAAGAACCGGAGGTTCGAGAAAACTATACGCTACGCCTCAAGAAAGGCTTACGCAGAAACTCGGCCGAGAATTAAAGGCCGATTTGCTAAGCGAAACGACTTCCACTCCGACGTCGACCGAATGTACAGTTCGGTTTCGGCTAATTTCCACGCCGAACATCAATACGGCATCGTTCCGTCATTTTGA 1029 51.21 MVMGIAAKPCDSCKLAPAVLFCRSDVVFLCLRCDADIHKLGLRHERVWMCEVCEQAPAVVTCKADAATLCVTCDADIHSANPLARRHERVPVGSFFNSAESMVKSSSAAFNFLVTHGADIGVADGGRKDNGEAASRLLNSKLMEGEQLKSEDMFFSEMDSFIDFEYSNPITGNDSVVPVQTKQISAAAINHSNENCFDIDFCRSKLNSFSYPSHTISHSISSSSLDVGIVPDGGNSFSEISHSFGRNVVEPWISVSATTEQAVPLCGLDREAKVLRYKEKKKNRRFEKTIRYASRKAYAETRPRIKGRFAKRNDFHSDVDRMYSSVSANFHAEHQYGIVPSF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45146901 45148014 + Bma024002.1 Bma06g00932 84434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00932 342 Pfam CCT motif 270 312 IPR010402 GO:0005515
Bma06g00932 342 CDD Bbox1_BBX-like 9 49 - -
Bma06g00932 342 ProSiteProfiles Zinc finger B-box type profile. 5 49 IPR000315 GO:0008270
Bma06g00932 342 SMART bboxneu5 5 49 IPR000315 GO:0008270
Bma06g00932 342 SMART bboxneu5 50 92 IPR000315 GO:0008270
Bma06g00932 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 342 IPR045281 GO:0009909
Bma06g00932 342 Pfam B-box zinc finger 8 47 IPR000315 GO:0008270
Bma06g00932 342 Pfam B-box zinc finger 47 92 IPR000315 GO:0008270
Bma06g00932 342 ProSiteProfiles Zinc finger B-box type profile. 45 92 IPR000315 GO:0008270
Bma06g00932 342 ProSiteProfiles CCT domain profile. 270 312 IPR010402 GO:0005515
Bma06g00932 342 CDD Bbox1_BBX-like 50 92 - -
Bma06g00932 342 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00932 - - - zju:107415202 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00353 Bma-Chr1:2903567 Bma06g00932 Bma-Chr6:45146901 1.14E-132 dispersed
Bma01g01259 Bma-Chr1:16771404 Bma06g00932 Bma-Chr6:45146901 5.02E-86 dispersed
Bma02g00460 Bma-Chr2:7118414 Bma06g00932 Bma-Chr6:45146901 1.77E-70 dispersed
Bma06g00932 Bma-Chr6:45146901 Bma06g01334 Bma-Chr6:50294261 7.86E-12 dispersed
Bma06g00924 Bma-Chr6:44829716 Bma06g00932 Bma-Chr6:45146901 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57494 PF00643 zf-B_box 1.90E-06 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00932 Bma_Chr06 FPKM 47.11544 43.809593 7.002563 8.228165 11.006892 12.930699 10.335241 66.553268 71.71904 69.713654