Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00955 ATGGATGTGTACGAATCAGCATTGTCAAGAAAGCATTCAGCCCAGGTGACGACTAGACTGCCATTAGTTCCAGCCGAAAAGAACAATGCAATCAGCACCAGGCGCGCTCCAACGAGGGAAGTTAGTTCTAGGTACAAATCACCTGCTCCATCAACGCCCTCTGGCCCTAGGCGTTGCGTATCACCACATACATCTAGAGCAGTGTCTGCTACTTCCCCCTTGGTTCAGAAAAGAGCCCAATCGGCAGAAAGGAAGCGGCCTTCCACGCCTCCATCCCCACCAAGTCCATCTACATCAGTCCATGATTTGTCCTTGGACACGTTAAGAAGAACATCGGTTGGTGGTCGACCGGAGAGCTTATGGCCATCCACTATGCGAAGTTTGAGTGTTTCATTTCAGTCTGATGCAATATCTGTTCCGGTTAGTAAGAAGGAAAAACCAGTCACGACAGCACCTCTTGATCGAACATTGAGGCCATCTTCAAATGTGGCTCATAAGCTGGGTGAAACTCCATCTGCCCCACGAAAGCCTACCCCAGAGAGAAAGAGAAGTCCTGTTAAAGGAAAGATTGTGCCTGATGAATCAGAAAATTCTAAGCCAGTGGATGGAGTACATAGCCGATTGTTAGCTCAACACAGATGGCCTAGAATTGGTGGAAAAGTGTCATCCAATCCATTAAGTAGAAGTGTTGATCTCACTGATAAACCAATCCGAAGTTTGAGTACATCACTTCCTGGAAATGGATCATATTCTTTGAGGAGAACAGCATCTGACTCTATTGGCAAATCTTTGCAAAAATCTATTAGTAATTCTAGTGAAAGCGTTAAAGTAGGCTGTGAAATATATTCAATGGATGGAAGTTTTCTTCCAGTTTCCGGGAAGCTCGTTTCTACTCGATCAGGAGACCGAGCAGCTATAAGTTCTGCAGTAAGATCTCATTTTTCGTCCGCACCGGGATCTCGTCTACCATCACCTAATAAAACTTCAGTCACACCGGCTTCAGTTAGTAGAGGAGTCAGTCCATCACGTTCAAGGCCATCAACTCCTCCACGTGGAATCAGTCCATCTCGAATAATGTCATCCAGTACTAGTCAGTCTAATAATTCAACTTCTGTGCTCACTTTCATTGCGGATGTGAAGAAAGGAAAAAAGGGAGCTAATCATATAGAAGATGCTCATCAGCTGAAGCTGCTGTATAATAGATGTTTACAGTGGAGATTTGCTAATGCGCAATCAGAGTCTGTACTTCATATTCAAGAAGTAACTGCAGAGGGAGCCTTATACAACGTGTGCAAGAGTACTCTCGATCTGTGGGATTCAGTAATCAGTAAAAGCATTAATCTCCAACAGCTGAAGCTAGATATTAAGTTGAAGTCAGTTTTGAACGATCAATTAGCCCATCTTGAAGAATGGGCTGTGCTTGAGAGAGACCATGTTGGTTCTTTATCAGGGGCGGTGGAAGACCTTGAGGCATGCACCCTCCGCATCCCAGTTACTGGAGGAGCAAAAGCAGATGTTGAATCTCTAAAAGGTGCCATCTGTTCAGCTGTGGACGTTATGCAAGCAATGGGATCTTCTATTTGCTCTTTGCTTTCAAGGGCGGAAGAAATGAACATTTTAATTTCTAAACTTTCTGCCATAGCAGCACATGAAAAGACCATGCTTACCAAATGTGAAGGACTATTGGCTTCCATGACAGCTATGCAGGTTAGAATAATTGTTCATTTTGTTCGACTTTCTAATCAATCATGGATGTATATAATACGCCCACCCACACTTCATTCCTCGAACCTTTTTTCCTTCATAAAACTCCAAAGCAAAAACTTTCATTTTCCACCCAAGCTCTTTTCTTCACCCATGGAAGCCAGCGCAGGCCTCGTTGCTGGCTCGCACAACCGAAACGAGCTCGTCGTCATTCACGGCCACGATGAGCCGAAGCCCTTGAGGAATTTGGACGGTCAGGTTTGCGAAATATGTGGAGATGAAGTGGGGATTACGGTGGACGGAGATCTGTTCGTCGCCTGTAACGAATGTGGCTTTCCTGTTTGTCGGCCGTGTTACGAGTATGAGAGAAGAGAAGGGAGCCAGCTCTGGAGTCCGAGAGTTCAAGGCGATGAAGACGAAGAGGATGTGGACGATATTGAGCATGAATTCAACATTGAGCATGAGAAGAACAAGCACAAACATCTTGCAGAAGCTATGCTTCATGGAAAGATGAGTTACGGAAGAGGTCCGGAAGAAGATGACAACCCTCAATTACATCAGGTGAGTGGTGAGCTCGCTATATCATCTCATGGCCATGGAGATCAAATGTTGTCATCTTCCCTGCATAAACGAGTGCATCCATATCCTGCTTCTGAACCTGGAAGTGAGCGATGGGACGAGAAGAAAGATGAAGGGTGGAAAGAGAGAACGGATGACTGGAAATTACAACAAGGCAATTTGGGGCCTGAGCCTGATGATGACCCTGACATGGCCATGATTGATGAAGCAAGACAGCCACTTTCAAGGAAAGTACCAATAGCGTCAAGCAAAGTAAATCCTTATCGGATGATCATTGTGGCTCGGCTTGTTATTCTCGCCTTCTTTCTTCGTTACAGGATTTTAAACCCTGTACATGATGCATTTGGACTCTGGTTAACTTCTGTGATATGCGAAATCTGGTTTGCTTTCTCATGGATTCTCGATCAGTTTCCTAAATGGTTTCCAATCGATCGCGAGACTTATCTCGATCGCCTTTCTCTCAGGTATGAACGAGAGGGCGAACCTAACATGCTTGCACCTGTAGATGTCTTTGTTAGTACTGTGGATCCATTGAAGGAACCTCCTCTTGTTACAGCTAATACAGTTCTTTCAATCTTAGCCATGGACTACCCAGTAGACAAAATTTCATGTTACATTTCTGATGATGGAGCTTCTATGCTCACCTTTGAAGCCATGTCATTAACAGCAGAATTTGCACGCAAATGGGTACCCTTCTGTAAAAAGTTTTCCATAGAACCTCGAGCCCCTGAAATGTATTTCTCGGAGAAGATGGATTACCTCAAAGATAAAGTCCAGCCTACATTTGTCAAAGAACGTCGAGCAATGAAGAGAGAGTATGAGGAATTCAAAGTTAGAACAAATGCTCTCGTGGCGAAAGCCATGAAAGTTCCTCCAGAAGGATGGATTATGCAAGATGGAATTCCATGGCCTGGAAATAACACCAAGGATCACCCTGGTATGATTCAAGTTTTTCTTGGTCATAGTGGAGGACTCGATGCCGAAGGAAATGAGCTTCCTCGCCTTGTTTATGTTTCTCGTGAAAAAAGGCCTGGTTTCCAACATCACAAGAAAGCTGGAGCCATGAACGCTTTAATTCGTGTCTCTGCAGTTCTTACAAATGCTTCTTTTATGCTGAATTTGGATTGTGATCATTACATAAACAACAGCAAGGCAGTGAGAGAAGCCATGTGTTTTCTAATGGATTCTACAATCGGAAAGAAAGTTTGTTATGTGCAGTTCCCACAACGATTCGACGGAATCGACAGGCATGATCGTTATGCCAATAGAAACACAGTCTTCTTTGATATTAATATGAAAGGTCTAGACGGAATTCAAGGTCCTGTATACGTGGGCACTGGATGTGTTTTCAGAAGGCAAGCTTTATATGGATATGAACCTCCAAAGAGGCCAAAGCGCCCAAAGATGATAAGTTGCGACTGTTGCCCGTGTTTCGGACGTCGCAAGAAGCTGAGCAAGTATTCTAAGCATACAGATGGAGATACAGCAGCAGGAATGGAAGATGACAAGGAATTATTGATGTCCCAAATGAACTTTGAGAAGAAATTTGGACAGTCAGCAATTTTTGTCACATCTACTTTAATGGAAGAAGGTGGTGTTCCTCCTTTCTCTAGTCCAGCATCACTGCTTAAAGAGGCAATCCATGTCATCAGTTGCGGCTATGAAGACAAAACAGAATGGGGTATTGAGCTTGGTTGGATTTATGGATCTATCACAGAGGATATCTTAACCGGGTTTAAGATGCATTGTCGCGGATGGAGATCAATATATTGCATGCCTAAAAGGGCTGCCTTTAAGGGAACTGCTCCAATCAACTTGTCTGATAGACTAAATCAGGTGCTGCGTTGGGCTCTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTGTTTGGTATGGCTATAAAGGAGGAAAGCTCAAGTGGCTTGAGAGATTTGCTTATGTTAATACAACTGTTTATCCCTTCACATCAATCCCTCTCCTTGCCTACTGCATCCTCCCTGCCATTTGCCTGCTCACGGATAAATTCATCATGCCTCCGATAAGCACATTTGCAAGCCTCTTCTTCATAGCTCTGTTCCTCTCCATCTTCGCAACGGGGATTCTCGAGCTTAGATGGAGCGGAGTGAGCATAGAAGAATGGTGGAGAAATGAGCAATTCTGGGTGATAGGTGGTGTCTCAGCTCATCTCTTTGCAGTCATTCAAGGCCTGCTAAAGGTTTTGGGTGGAATTGACACAAATTTCACTGTTACATCAAAAGCAGTCGACGATGAAGATTTCGGAGAATTATACACATTCAAATGGACAACTCTTTTGATTCCTCCAACAACAATCTTAATCATCAATCTTGTAGGAGTTGTAGCTGGTATTTCAGATGCTATAAACAATGGCTATCAATCCTGGGGGCCTCTATTTGGAAAACTTTTCTTTTCCTTCTGGGTAATTCTTCACCTCTACCCCTTCCTTAAAGGTCTAATGGGTCGGCAAAACCGGACTCCGACGATCGTCGTCATATGGTCAGTTCTCTTGGCTTCCATCTTCTCTTTGCTTTGGGTTAGGATTGATCCTTTTGTGATGAAAACTAAAGGCCCTGATGTGAAGCAGTGTGGAATTAATTGCTGA 4908 43.95 MDVYESALSRKHSAQVTTRLPLVPAEKNNAISTRRAPTREVSSRYKSPAPSTPSGPRRCVSPHTSRAVSATSPLVQKRAQSAERKRPSTPPSPPSPSTSVHDLSLDTLRRTSVGGRPESLWPSTMRSLSVSFQSDAISVPVSKKEKPVTTAPLDRTLRPSSNVAHKLGETPSAPRKPTPERKRSPVKGKIVPDESENSKPVDGVHSRLLAQHRWPRIGGKVSSNPLSRSVDLTDKPIRSLSTSLPGNGSYSLRRTASDSIGKSLQKSISNSSESVKVGCEIYSMDGSFLPVSGKLVSTRSGDRAAISSAVRSHFSSAPGSRLPSPNKTSVTPASVSRGVSPSRSRPSTPPRGISPSRIMSSSTSQSNNSTSVLTFIADVKKGKKGANHIEDAHQLKLLYNRCLQWRFANAQSESVLHIQEVTAEGALYNVCKSTLDLWDSVISKSINLQQLKLDIKLKSVLNDQLAHLEEWAVLERDHVGSLSGAVEDLEACTLRIPVTGGAKADVESLKGAICSAVDVMQAMGSSICSLLSRAEEMNILISKLSAIAAHEKTMLTKCEGLLASMTAMQVRIIVHFVRLSNQSWMYIIRPPTLHSSNLFSFIKLQSKNFHFPPKLFSSPMEASAGLVAGSHNRNELVVIHGHDEPKPLRNLDGQVCEICGDEVGITVDGDLFVACNECGFPVCRPCYEYERREGSQLWSPRVQGDEDEEDVDDIEHEFNIEHEKNKHKHLAEAMLHGKMSYGRGPEEDDNPQLHQVSGELAISSHGHGDQMLSSSLHKRVHPYPASEPGSERWDEKKDEGWKERTDDWKLQQGNLGPEPDDDPDMAMIDEARQPLSRKVPIASSKVNPYRMIIVARLVILAFFLRYRILNPVHDAFGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMLTFEAMSLTAEFARKWVPFCKKFSIEPRAPEMYFSEKMDYLKDKVQPTFVKERRAMKREYEEFKVRTNALVAKAMKVPPEGWIMQDGIPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNASFMLNLDCDHYINNSKAVREAMCFLMDSTIGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYEPPKRPKRPKMISCDCCPCFGRRKKLSKYSKHTDGDTAAGMEDDKELLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPFSSPASLLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLGGIDTNFTVTSKAVDDEDFGELYTFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDVKQCGINC 1635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 45847014 45864846 + Bma024032.1 Bma06g00955 84457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00955 1635 Pfam QWRF family 264 555 IPR007573 -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 1 106 - -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 780 823 - -
Bma06g00955 1635 SUPERFAMILY Nucleotide-diphospho-sugar transferases 943 1458 IPR029044 -
Bma06g00955 1635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 716 IPR013083 -
Bma06g00955 1635 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 620 1635 - -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 139 202 - -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 311 367 - -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 175 201 - -
Bma06g00955 1635 Pfam Zinc-binding RING-finger 646 711 IPR027934 -
Bma06g00955 1635 SUPERFAMILY RING/U-box 640 716 - -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 64 78 - -
Bma06g00955 1635 CDD mRING-HC-C4C4_CesA_plant 654 696 - -
Bma06g00955 1635 MobiDBLite consensus disorder prediction 31 50 - -
Bma06g00955 1635 Pfam Cellulose synthase 929 1629 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bma06g00955 1635 MobiDBLite consensus disorder prediction 784 809 - -
Bma06g00955 1635 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1066 1220 IPR029044 -
Bma06g00955 1635 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 620 1635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01357 Bma-Chr2:55985418 Bma06g00955 Bma-Chr6:45847014 6.45E-16 dispersed
Bma06g00533 Bma-Chr6:27321590 Bma06g00955 Bma-Chr6:45847014 0 dispersed
Bma06g00955 Bma-Chr6:45847014 Bma10g01078 Bma-Chr10:30875439 0 dispersed
Bma07g01243 Bma-Chr7:47417258 Bma06g00955 Bma-Chr6:45847014 3.08E-121 dispersed
Bma12g00758 Bma-Chr12:34540617 Bma06g00955 Bma-Chr6:45847014 1.24E-20 dispersed
Bma12g01170 Bma-Chr12:44518296 Bma06g00955 Bma-Chr6:45847014 4.62E-14 dispersed
Bma14g00677 Bma-Chr14:7319802 Bma06g00955 Bma-Chr6:45847014 9.91E-125 dispersed
Bma04g00063 Bma-Chr4:561763 Bma06g00955 Bma-Chr6:45847014 0 transposed
Bma05g00054 Bma-Chr5:2372409 Bma06g00955 Bma-Chr6:45847014 5.99E-51 transposed
Bma05g00655 Bma-Chr5:38435762 Bma06g00955 Bma-Chr6:45847014 2.95E-82 transposed
Bma05g01323 Bma-Chr5:52786012 Bma06g00955 Bma-Chr6:45847014 0 transposed
Bma14g00986 Bma-Chr14:11505694 Bma06g00955 Bma-Chr6:45847014 0 transposed
Bma01g00334 Bma-Chr1:2726640 Bma06g00955 Bma-Chr6:45847014 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00955 K10999 - csv:101214842 1913.27