Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00962 ATGGCCGGGGATGGAGTTTTTGCAGAGCTGTTGGACGGGGAAGTGTACAAGTACTATTCTGAGGGAGAGTGGAAGAAATCTTCATCGGGGAAAAGCGTTTCCATCATCAACCCCACTACTCGAAAGACTGAGTACAGGGTTCAAGCTTGTACACAAGAAGAGGTGAATAAAGTGATGGAAATATCAAAAGCTGCTCAGAAATCTTGGGCCAAGACTCCATTATGGAGGAGAGCGGAGCTTCTTCACAAAGCAGCTGCCATACTCAAAGATCACAGAGCCAAAATAGCAGAGTGTCTGGTTAAAGAAATAGCAAAACCAGCAAAAGATGCTGTAACAGAGGTTGTGAGGTCTGGAGATCTTGTTTCTTACACTGCTGAAGAGGGAGTTAGGATTTTGGGAGAGGGGAAGTTTTTAGTTTCTGATAGTTTCCCTGGAAATGAGAGGACAAAATACTGCCTTACTTCGAAGATCCCACTGGGTGTAGTTTTAGCCATTCCGCCGTTTAATTATCCGGTCAACTTGGCTGTCTCAAAAATAGCTCCAGCACTGATAGCCGGAAACTCACTCGTGCTTAAACCTCCAACTCAGGGAGCTGTTTCTGCCCTTCACATGGTGCATTGCTTTCATTTGGCTGGATTTCCCAAAGGCCTTATCAATTGTGTCACTGGTAAAGGCTCTGAGATCGGCGATTTCCTTACCATGCATCCGGGCGTTAATTGTATAAGCTTCACAGGTGGGGACACAGGCGTCGCAATTTCGAAGAAGGCGGGAATGATACCTCTTCAGATGGAGTTGGGAGGAAAAGATGCCTGTATTGTGCTTGAGGATGCAGACTTAGATTTAGTAGCTGCAAACATAATAAAAGGAGGTTTCTCCTACAGTGGTCAAAGGTGTACAGCTGTTAAGGTTGTGTTGGTGATGGAATCCGTTGCCGATGCTTTGGTCGAGAAAGTGAATGCCAGAGTGGCAAAATTGACGGTAGGACCACCGGATGATGACTGCGATATTACTCCGGTCGTGACCGAGTCATCTGCTAATTACATTGAAGGGTTGGTTATCGACGCGAAAGAGAAAGGGGCGACATTTTGCCAAGAGTACAAGAGAGAAGGCAACCTAATTTGGCCATTGTTGTTAGATAATGTCAGGCCAGACATGAGGATCGCATGGGAAGAACCCTTTGGACCTGTTTTGCCGGTTATTCGAATAAGTACCGTCGAAGAGGGAATTCACCACTGTAACGCAAGTAATTTCGGACTGCAGGGATCTGTGTTCACAAAGGATGTGAACAAAGCCATGCTAATCAGCGATGCAATGGAGACCGGAACGGTTCAAATCAACTCGGCCCCGGCACGAGGCCCCGACCATTTTCCGTTCCAGGGTATAAAAGACAGTGGAATTGGGTCACAAGGCATCACCAACAGCATCAACATGATGACCAAGGTGAAAACAACTGTTATTAACTTACCATCCCCCTCTTATACCATGGGTTAA 1491 46.28 MAGDGVFAELLDGEVYKYYSEGEWKKSSSGKSVSIINPTTRKTEYRVQACTQEEVNKVMEISKAAQKSWAKTPLWRRAELLHKAAAILKDHRAKIAECLVKEIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGPPDDDCDITPVVTESSANYIEGLVIDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISTVEEGIHHCNASNFGLQGSVFTKDVNKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46029103 46032116 - Bma024042.1 Bma06g00962 84464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00962 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Bma06g00962 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Bma06g00962 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Bma06g00962 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Bma06g00962 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Bma06g00962 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Bma06g00962 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Bma06g00962 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Bma06g00962 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00962 K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] - gmx:100789100 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00962 Bma-Chr6:46029103 Bma05g00591 Bma-Chr5:35840271 2.63E-67 dispersed
Bma06g00962 Bma-Chr6:46029103 Bma12g01022 Bma-Chr12:42322685 1.88E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma07g00481 . 6 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.1 2.2e-216 748.4
Bma01g01773 . 8 505 Aldehyde Dehydrogenase Gene Family AT3G24503 70.2 2.6e-209 724.9
Bma06g01043 . 1 506 Aldehyde Dehydrogenase Gene Family AT3G24503 67.5 2.0e-201 698.7
Bma11g00506 . 1 440 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 2.0e-193 672.2
Bma01g00407 . 1 467 Aldehyde Dehydrogenase Gene Family AT3G24503 68.2 4.3e-188 654.4
Bma01g00054 . 36 540 Aldehyde Dehydrogenase Gene Family AT3G24503 54.2 5.1e-157 551.2
Bma01g00054 . 1 540 Aldehyde Dehydrogenase Gene Family AT3G48000 76.3 8.8e-248 852.8
Bma07g00481 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 56.0 1.2e-164 576.6
Bma01g01773 . 7 505 Aldehyde Dehydrogenase Gene Family AT3G48000 55.9 1.1e-162 570.1
Bma06g01043 . 17 506 Aldehyde Dehydrogenase Gene Family AT3G48000 54.5 5.3e-160 561.2
Bma01g00407 . 1 467 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-151 532.7
Bma11g00506 . 2 440 Aldehyde Dehydrogenase Gene Family AT3G48000 56.7 1.4e-149 526.6
Bma01g00054 . 1 384 Aldehyde Dehydrogenase Gene Family AT1G23800 77.5 1.2e-172 602.8
Bma06g01043 . 17 350 Aldehyde Dehydrogenase Gene Family AT1G23800 55.1 3.2e-101 365.5
Bma07g00481 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 5.5e-101 364.8
Bma01g01773 . 1 349 Aldehyde Dehydrogenase Gene Family AT1G23800 51.9 5.2e-99 358.2
Bma01g00407 . 1 311 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 8.5e-94 340.9
Bma11g00506 . 2 284 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 7.7e-87 317.8
Bma04g00013 . 7 481 Aldehyde Dehydrogenase Gene Family AT4G34240 62.1 1.5e-175 612.8
Bma06g00492 . 49 403 Aldehyde Dehydrogenase Gene Family AT4G34240 65.4 1.6e-129 459.9
Bma04g00013 . 68 479 Aldehyde Dehydrogenase Gene Family AT1G44170 72.6 2.3e-179 625.2
Bma11g00290 BCT 67 481 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 5.7e-117 417.9
Bma07g00256 BCT 60 474 Aldehyde Dehydrogenase Gene Family AT1G44170 51.3 6.9e-115 411.0
Bma06g00107 . 77 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.7 1.2e-114 410.2
Bma06g00492 . 145 403 Aldehyde Dehydrogenase Gene Family AT1G44170 69.1 1.5e-101 366.7
Bma06g00107 . 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 7.8e-187 650.2
Bma11g00290 BCT 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 2.6e-158 555.4
Bma07g00256 BCT 1 476 Aldehyde Dehydrogenase Gene Family AT4G36250 53.7 4.3e-153 538.1
Bma05g00591 . 1 490 Aldehyde Dehydrogenase Gene Family AT1G79440 75.3 2.8e-222 768.1
Bma12g00574 . 1 477 Aldehyde Dehydrogenase Gene Family AT1G79440 77.2 4.5e-212 734.2
Bma12g00367 . 2 489 Aldehyde Dehydrogenase Gene Family AT1G79440 70.0 3.7e-198 688.0
Bma08g00029 . 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.9 8.5e-236 813.1
Bma09g00142 . 1 396 Aldehyde Dehydrogenase Gene Family AT2G14170 61.5 3.2e-142 502.3
Bma12g01022 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 1.5e-246 848.6
Bma08g00185 . 1 528 Aldehyde Dehydrogenase Gene Family AT1G74920 76.9 7.6e-246 846.3
Bma12g01022 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 78.7 5.7e-249 856.7
Bma08g00185 . 1 528 Aldehyde Dehydrogenase Gene Family AT3G48170 75.2 3.8e-245 844.0
Bma06g00962 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.3 2.0e-262 901.4
Bma04g01129 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G66658 81.3 3.8e-276 947.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00962 Bma_Chr06 FPKM 11.705645 12.783761 10.115204 11.092775 13.623429 12.252288 13.441979 12.07421 10.044559 11.164701