Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00962 ATGGCCGGGGATGGAGTTTTTGCAGAGCTGTTGGACGGGGAAGTGTACAAGTACTATTCTGAGGGAGAGTGGAAGAAATCTTCATCGGGGAAAAGCGTTTCCATCATCAACCCCACTACTCGAAAGACTGAGTACAGGGTTCAAGCTTGTACACAAGAAGAGGTGAATAAAGTGATGGAAATATCAAAAGCTGCTCAGAAATCTTGGGCCAAGACTCCATTATGGAGGAGAGCGGAGCTTCTTCACAAAGCAGCTGCCATACTCAAAGATCACAGAGCCAAAATAGCAGAGTGTCTGGTTAAAGAAATAGCAAAACCAGCAAAAGATGCTGTAACAGAGGTTGTGAGGTCTGGAGATCTTGTTTCTTACACTGCTGAAGAGGGAGTTAGGATTTTGGGAGAGGGGAAGTTTTTAGTTTCTGATAGTTTCCCTGGAAATGAGAGGACAAAATACTGCCTTACTTCGAAGATCCCACTGGGTGTAGTTTTAGCCATTCCGCCGTTTAATTATCCGGTCAACTTGGCTGTCTCAAAAATAGCTCCAGCACTGATAGCCGGAAACTCACTCGTGCTTAAACCTCCAACTCAGGGAGCTGTTTCTGCCCTTCACATGGTGCATTGCTTTCATTTGGCTGGATTTCCCAAAGGCCTTATCAATTGTGTCACTGGTAAAGGCTCTGAGATCGGCGATTTCCTTACCATGCATCCGGGCGTTAATTGTATAAGCTTCACAGGTGGGGACACAGGCGTCGCAATTTCGAAGAAGGCGGGAATGATACCTCTTCAGATGGAGTTGGGAGGAAAAGATGCCTGTATTGTGCTTGAGGATGCAGACTTAGATTTAGTAGCTGCAAACATAATAAAAGGAGGTTTCTCCTACAGTGGTCAAAGGTGTACAGCTGTTAAGGTTGTGTTGGTGATGGAATCCGTTGCCGATGCTTTGGTCGAGAAAGTGAATGCCAGAGTGGCAAAATTGACGGTAGGACCACCGGATGATGACTGCGATATTACTCCGGTCGTGACCGAGTCATCTGCTAATTACATTGAAGGGTTGGTTATCGACGCGAAAGAGAAAGGGGCGACATTTTGCCAAGAGTACAAGAGAGAAGGCAACCTAATTTGGCCATTGTTGTTAGATAATGTCAGGCCAGACATGAGGATCGCATGGGAAGAACCCTTTGGACCTGTTTTGCCGGTTATTCGAATAAGTACCGTCGAAGAGGGAATTCACCACTGTAACGCAAGTAATTTCGGACTGCAGGGATCTGTGTTCACAAAGGATGTGAACAAAGCCATGCTAATCAGCGATGCAATGGAGACCGGAACGGTTCAAATCAACTCGGCCCCGGCACGAGGCCCCGACCATTTTCCGTTCCAGGGTATAAAAGACAGTGGAATTGGGTCACAAGGCATCACCAACAGCATCAACATGATGACCAAGGTGAAAACAACTGTTATTAACTTACCATCCCCCTCTTATACCATGGGTTAA 1491 46.28 MAGDGVFAELLDGEVYKYYSEGEWKKSSSGKSVSIINPTTRKTEYRVQACTQEEVNKVMEISKAAQKSWAKTPLWRRAELLHKAAAILKDHRAKIAECLVKEIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGPPDDDCDITPVVTESSANYIEGLVIDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRISTVEEGIHHCNASNFGLQGSVFTKDVNKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46029103 46032116 - Bma024042.1 Bma06g00962 84464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00962 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Bma06g00962 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Bma06g00962 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Bma06g00962 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
Bma06g00962 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Bma06g00962 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Bma06g00962 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Bma06g00962 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Bma06g00962 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00962 Bma-Chr6:46029103 Bma05g00591 Bma-Chr5:35840271 2.63E-67 dispersed
Bma06g00962 Bma-Chr6:46029103 Bma12g01022 Bma-Chr12:42322685 1.88E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00962 K00131 - gmx:100789100 914.835