Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00968 ATGACGAGCTGCGTCAATGTTGCCCCTGAGCAACTTTGCTACATACCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAATGTTCCATGCAGCAATATGTTTGACATTGTCACTGTCCTATGTGGTCACTGCAAAAATCTCTGGTCTGTGAACATGGCATCTGCATTTCAGTCACGTTCATGGAAAGATCCCCAGGCTCAAATTTACTCCTCCAATCCACCAGACCATTATCGAATCGACTCAGGTTCCTCGTCCAAATGCAACAACAAGATGAGACTTCGTCTTCGGACCAAAAACTCAAATTCAGCTGAGAGGCTTGCGAATCGAACTCCCGAGAAGAGGCAAAGGATTCCTTCTGCATATAATCAGTTCATAAAGGAAGAAATTCAGAGGATCAAGGCCAATAAGCCAGATATTTCCCACAGGGAAGCATTTAGCACTGCTGCAAAAAATTGGGCACACTTCCCTCATATTCATTATTCACTTTGGTCTGATGCTAGAAACAAACAACCAGGCCAAGGCTGA 525 44.0 MTSCVNVAPEQLCYIPCNFCNIVLAVNVPCSNMFDIVTVLCGHCKNLWSVNMASAFQSRSWKDPQAQIYSSNPPDHYRIDSGSSSKCNNKMRLRLRTKNSNSAERLANRTPEKRQRIPSAYNQFIKEEIQRIKANKPDISHREAFSTAAKNWAHFPHIHYSLWSDARNKQPGQG 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46190174 46192793 - Bma024051.1 Bma06g00968 84470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00968 174 Gene3D High mobility group box domain 106 170 IPR036910 -
Bma06g00968 174 Pfam YABBY protein 8 162 IPR006780 GO:0007275
Bma06g00968 174 SUPERFAMILY HMG-box 105 156 IPR036910 -
Bma06g00968 174 PANTHER AXIAL REGULATOR YABBY 5 1 169 - -
Bma06g00968 174 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00968 Bma-Chr6:46190174 Bma11g00817 Bma-Chr11:25431353 1.34E-78 dispersed
Bma01g00320 Bma-Chr1:2644910 Bma06g00968 Bma-Chr6:46190174 1.42E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57496 PF04690 YABBY 2.40E-64 CL0114 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00968 K25796 - vvi:100254328 258.84