Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma06g00970 | ATGTCGCAAGGCTATGCCATCGAACTTTACTTCAATCCGGCTATCGAAAATCAGGTGTTGAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACTCAACTCATCGAAATCGAATCCCGCCCTCACATCACCCTCTTCTCCACTACCCTCCTCGAACCTGCAAAGCTTCAAGTCATTTCCAAAACCTTGGCTTCCAGGAAAGAACCGTTGCCTCTCTCTTTCTCGTATGTTGGAAGCCTTCCCAGCAACAACAATGTTCTTTTTCTCGAGCCGATGCCTTCGATTTCGCTCCTCCAGCTTAACTCACAATTGTGCGAAGCATTGAGGAAAGAAGGAATCAAAATTGGGGATGAATATCGGGTCCATTCGTGGATTCCATTCTATGCGGTTGCTGAAGAGGTACCTAAGGCATGTATGGCAGAGGCCTTTTCGGTTCTTCGAGACCTGAAGTTGCCAGTTTCTGGATACGTAATGGACATTGGATTGGTGGAGTTTTCCCCAGTTCGTGAACTCCTCTCCTTTGCCCTCGGCAACACTTTAGAGCCATGA | 552 | 47.64 | MSQGYAIELYFNPAIENQVLKAWNVLARRQISTQLIEIESRPHITLFSTTLLEPAKLQVISKTLASRKEPLPLSFSYVGSLPSNNNVLFLEPMPSISLLQLNSQLCEALRKEGIKIGDEYRVHSWIPFYAVAEEVPKACMAEAFSVLRDLKLPVSGYVMDIGLVEFSPVRELLSFALGNTLEP | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 46259977 | 46260528 | - | Bma024054.1 | Bma06g00970 | 84472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma06g00970 | 183 | PANTHER | - | 1 | 181 | - | - | |
| Bma06g00970 | 183 | SUPERFAMILY | LigT-like | 4 | 164 | IPR009097 | - | |
| Bma06g00970 | 183 | Gene3D | Cyclic phosphodiesterase | 5 | 179 | - | - | |
| Bma06g00970 | 183 | Pfam | 2'-5' RNA ligase superfamily | 41 | 164 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma06g00970 | Bma-Chr6:46259977 | Bma14g01523 | Bma-Chr14:30727113 | 6.28E-122 | dispersed | |
| Bma06g00970 | Bma-Chr6:46259977 | Bma05g00822 | Bma-Chr5:45578562 | 2.76E-53 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma06g00970 | - | - | csv:101208638 | 283.878 |