Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00994 ATGACATTGGAGGACACAGCGAATAGATTTTCCGGTGATAATGACCGGTTTCCGGTGGGTCTGCGGGTGCTTGCGGTGGACGACGACGCTTCTTGTCTGAAATTGGTAGAGAATCTTCTTCGAAAGTGCCAGTATAATGTAACAACTACCAATCAGCCAATGGAGGCATTGAAAATGTTGAGGGGAAATAAAGACCAGTTTGACATTGTAATCACTGATGTAAACATGCCCGGAATGGATGGTTATAAGCTTCTCGAGCTGATCGGGCTCGAGATGGACCTCCCCGTCATAATGTTGTCGGCTCATAGCGATACGGAGTTTGTAATGAAGGGAATCTATCATGGGGCTTGTGATTATCTCGTGAAACCGTGTCGAATGGCCGAGATCAAGAACATATGGCAACATGTTGTCCGGAAAAAGAGTATGGATCAAAAGGGCAAGAATGATAATTCGAATCCAGATGAACGAGGATTCGTATTGGCTGAAAATTCCGATAATTTGAAAGTGGGTCGAAAGCGAAAGGAACAAATTGAAGGGGGGGAAGACGAGAGGGACGAAAACGATAATGAAGATCCCTCGACTCAAAAGAAGCCTAGGGTGGTTTGGTCTGTAGAGCTGCACAGGAAGTTTGTTGCAGCTGTTACTCAATTGACTCTTAAAAAAGCTGTTCCGAAGAAGATTCTTGATCTGATGAACGTGGAAGGACTCACACGAGAAAATGTGGCAAGCCATCTTCAGCTCACTATATGCTTATTTGGTCATCTAATGCTGCAGAAATATAGGCTCTACCTGAAAAGAATTAGTGCTGCAGGAATCCAACAGGAAAATCCGATGCATATAAGTTTGATTGAGGGATTTGGATTGTCGGGATCTCGAATATTTTCGAGCAATGCGCTCTCATCGTATCCACCGGTTGAAGTTCTTGGTAAAGTCCACTCTCCTTCGGGATTGAACTTGCCGGGGATTGTTTCGCCCAGATTAATCCAACACAGCACTTCTCGTAACTTGAATGATTCTTTGGATTCGCCCGGAAAATTCCCTCAAAGCCAATCTCCTGATTTGTTTAACGAAATTCCGACATCGTTAGACCTCACCGACTTGCATCAAGAAAAGTCGTTATATAGAGAGTTTAATCCGATCAGCACTGCCACTGGCTTCTCTTACGCCCCGAATTTTCCGGACAATAAAGTGGTTTTGAATAGCTCAATTGATTCTATATCGAGATTCCCGGCCAATCGTATGATTTTAGATGGAAAAAATCATGGAGCCATAACCCCACCGATATCAGAATCTTTCGAAATCGACGGAAATGTCGCTTTGAATCTTTTGGGTCATGATCAAAGTAATGGAAATTGGCAGCAAGGTGTTCATTTATCTAAATTTCCACCTACTGGCTTGGGATCATCTGATGCTTGCTATCGTTGCGAAATACCTTCGAATAGCTCGAAAATATCTTATGGACACTCTCCAATTGGTTTCCCTTTGACGAATTCAATTCCAAAACCTCTGCTGGATTCAAGAGGAGACGAACAATGCCGAGAAGATCTGATCGGCATCATTGCCCCGACCATGGATTTTACACAGAAGCAGGAGTGGGAAGAACACAAACTGTTTGTTGACCACAATCCAAGTGGTTCGGACATTAATTCTCAGGTTTTGGCTGATGAAGTTATGAATCCACTAAGTCTGAGAATGGATCAAAATGGCTCAGTTAAAGTGGAAAAGTTCGATGTATCATCGTTGATTGGCCAATCAAATGACAATTTTACATCTTTTGGGGAGCACAATTTACTCGAAAATCTTGTTGGAGAGACAAAGATGAACTTCAATGCAAACAACATCTTAAATATGGCGCAACATGGATTCATTCCAAGTGATTTTGATTCTTTAGATGATATGGTGAATGTGGTTTCCGAACAGGTAATCTTTCAAATACACATTGCTTTTAAACATGTCGATATGTGTGTGCGCTCGCGCGATTGA 1983 42.46 MTLEDTANRFSGDNDRFPVGLRVLAVDDDASCLKLVENLLRKCQYNVTTTNQPMEALKMLRGNKDQFDIVITDVNMPGMDGYKLLELIGLEMDLPVIMLSAHSDTEFVMKGIYHGACDYLVKPCRMAEIKNIWQHVVRKKSMDQKGKNDNSNPDERGFVLAENSDNLKVGRKRKEQIEGGEDERDENDNEDPSTQKKPRVVWSVELHRKFVAAVTQLTLKKAVPKKILDLMNVEGLTRENVASHLQLTICLFGHLMLQKYRLYLKRISAAGIQQENPMHISLIEGFGLSGSRIFSSNALSSYPPVEVLGKVHSPSGLNLPGIVSPRLIQHSTSRNLNDSLDSPGKFPQSQSPDLFNEIPTSLDLTDLHQEKSLYREFNPISTATGFSYAPNFPDNKVVLNSSIDSISRFPANRMILDGKNHGAITPPISESFEIDGNVALNLLGHDQSNGNWQQGVHLSKFPPTGLGSSDACYRCEIPSNSSKISYGHSPIGFPLTNSIPKPLLDSRGDEQCREDLIGIIAPTMDFTQKQEWEEHKLFVDHNPSGSDINSQVLADEVMNPLSLRMDQNGSVKVEKFDVSSLIGQSNDNFTSFGEHNLLENLVGETKMNFNANNILNMAQHGFIPSDFDSLDDMVNVVSEQVIFQIHIAFKHVDMCVRSRD 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46458801 46461520 - Bma024081.1 Bma06g00994 84496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00994 660 CDD REC_typeB_ARR-like 23 137 - -
Bma06g00994 660 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Bma06g00994 660 MobiDBLite consensus disorder prediction 140 198 - -
Bma06g00994 660 SUPERFAMILY CheY-like 20 144 IPR011006 -
Bma06g00994 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 642 - -
Bma06g00994 660 SMART REC_2 21 133 IPR001789 GO:0000160
Bma06g00994 660 Gene3D - 193 268 - -
Bma06g00994 660 SUPERFAMILY Homeodomain-like 194 247 IPR009057 -
Bma06g00994 660 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Bma06g00994 660 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 247 IPR006447 GO:0003677
Bma06g00994 660 MobiDBLite consensus disorder prediction 166 180 - -
Bma06g00994 660 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 642 IPR045279 GO:0009736
Bma06g00994 660 Gene3D - 21 155 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00994 Bma07g00742 CCT
Bma06g00994 Bma07g00742 ECH
Bma01g00295 Bma06g00994 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00295 Bma-Chr1:2456059 Bma06g00994 Bma-Chr6:46458801 0 dispersed
Bma01g00296 Bma-Chr1:2471415 Bma06g00994 Bma-Chr6:46458801 0 dispersed
Bma06g00994 Bma-Chr6:46458801 Bma06g01483 Bma-Chr6:51407722 4.96E-32 dispersed
Bma07g00742 Bma-Chr7:20021750 Bma06g00994 Bma-Chr6:46458801 6.26E-164 transposed
Bma01g00293 Bma-Chr1:2444553 Bma06g00994 Bma-Chr6:46458801 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57497 PF00072 Response_reg 2.60E-25 CL0304 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00994 K14491 - jre:109012904 550.436