Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01012 GGAGAAAGGAAGAACATTAATTCAGAATTGTGGCATGCTTGCGCTGGACCTCTAGTTTCTCTACCTCCAGTTGGGAGCCTTGTGGTTTACTTTCCTCAAGGCCACAGTGAGCAGGTTGCAGCATCGATCAATAAGGAGACTGATTTCGTGCCCAACTATCCAAACCTTCCTTCCAAGTTGATTTGCATGCTTCAAAACGTCACTTTACATGCTGATCTCGAAACTGATGAAGTTTATGCACAAATGACCCTTCAGCCTGCATCCAAATCTGGTTTAGAAGCAAATATGTTGATTTCTCCTTTTTTTCAGTATGACAAGGAAGCTTTACTGGCATCTGATATGGGCCTCAAGCAAAGCCGGCAACCTACTGAGTTCTTCTGCAAAACTCTTACTGCTAGTGACACTAGCACCCATGGTGGCTTTTCCGTTCCTCGTCGGGCTGCCGAGAAGATATTTCCACCACTAGATTACACCATGCAACCCCCTGCTCAGGAGCTAGTTGCTAGAGATCTCCACGATACTTCTTGGGCTTTCAGACATATTTATCGCGGCCAACCGAAAAGACATCTGCTGACCACCGGCTGGAGTGTTTTTGTTAGTACAAAACGTCTTTTTGCTGGAGATTCGGTTCTTTTCATACGAGATGAAAAATCACAGCTTCTTTTAGGCATACGACGGGCTAATAAGCAGCAGCCAGCTCTTTCTTCATCTGTAATTTCTAGTGACAGCATGCACATTGGAATTCTTGCTTCTGCAGCTCATGCAGCTGCAAATAACAGTCCATTTACTATATTTTATAATCCTAGGGCTAGTCCTTCAGAATTTGTAATTCCTTTGGCCAAATATAATAAAGCAATGTACGCCCAAGTTTCCCTTGGCATGCGATTTCGAATGATGTTCGAGACCGAGGAGTTAGGAGTACGCAGATACATGGGTACTATCACCGGTATCAGCGACTTGGATGTAGTCCGATGGAAAAGTTCACAATGGCGTAATCTTCAGGTTGGATGGGATGAGTCTGCAGCAGGTGCAAGGCCGACCCGGGTTTCGATATGGGAAGTCGAGCCTGTTATAACGCCTTTCTACATATGCCCGCCTCCATTTTTCCGACCCAAATTGCCCAAACAACTGGGAATGGCAGATGATGAATCTGAAATCGAGAATGCTTTCAAGAGAGCCATGCCGTGGCTCGGGGACGACTTTGGCGTGAAGGACAGCCAGAGTCCAATTTTTCCCGGTCTAAGTTTGGTGCAGTGGATGAGCATGCAGCAAAGTAATCAATTTCCGTCTGCTCAATCCGGGTTTTTACCGTCTATGCTCTCTCCAAACGCCCATTCGCTGCATAACAGTTTAAGCACTGATGATCCATCTAAATTATTGAGTTTTCAAACTCCAGCGCTATCTTCGCCTACTCCTCCATATAACAAACCTAATCAGCAGGGCCAAGTTATTCAGTTGCAGCAGCCAGCCTCTGCCTGGCCCCAACAGCAACAACCACAGCCGCAGCCTCAGCCTCAGCCTCAGCCACAGCAATTACTGCAGATTCCCACCAGCCAACAGCTAGAACGGCAGCAACCTCAGCAATTAGCACATATTCAACCACAACACCAGCCAAACAAGCAAGTTCTGCCACAACAACAGCTGACCCAACAATCTCCTTCAAATAATGGTGTTCTTGTTGGTAACCAGATCCAAAATCAAACTTTGCAGCAGCCATTGCTGTACTCCCAGCTTCAGCTACAGCAGTTGATGGCCGGCAATGGCCAAACCCAGCAGCACAGTATGAATAAATCATTTCAGATGACATCTTTACCACAAGATTCCTTTTTTCAGCAACAAACGGATCAGCAAACGAGTCTCGTTCCTCGGCATCAGCAGCCAGCACAGTTACAACAGTCGCAACTTCAGTTATTACAGCCGGGGCTTTCGCAGAAAGCTCAACAGAACCAACCAGCCCAACAATTGGCTCAACAGATGACATCAGACCAGCAACTTCAGCTTCAGATGTTACAGAAATTACAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCTCTTTCCTGCAAACCCATTATTACAGTCTCAGGCAGTTCAGCTACAGCAGGGCCAGGGCCAGGGCCAGGGCCAGGGCCATCAGCAAAACCAGTATTCATCACAGCTGCCACAGTCTCATCTTCAGCAACAACAAAACACCAATGGCTTTTCAACTTCAGGCCATCTCCAGTCTCAACAGGCTCCCATAAACCAGGCCCAACCCCAGCCAAAGGGCCAATTCAAGCCGCTCAGTGCCATGAGAGCTCAGTCTATGACAGATGGTGATGCTCCATCTTGTTCAACTTCACCTTCCTCCAATTATTGCCATGTTCCAGCTTCAAACCTTTTGAACAGAAGGCAGGGACCAGTCACTCAAGCTGAATGTTCAGTAATCGAGCCTTCGAACAACCCACTTCAGGAACTTCAAAGTAAATACGATTCCCGAATCAAACATGAGTTTCCGTGCGAAAAAGGATCCGATCTGATTAAATTTAAAAGCACAGTCAATGATCAGTTAGAAGCATCCTCTTCCGGGACGTCATATTGTATAGATGCCGGGACCATACGGCAGCCGTTTGACAACGATGTCCAATCCCATCACCGGATGAACATTCCTTTCACGAGTAACATCGACGGCTTGATGCCAGATACTTCGCTATCAAGAGAATACGACTCCCAAAATTTACTTTCTAACTACAGCAGTATTCCGAGAGATATCGAAACGGAGCTGTCGAGCGCTCCTATCAGTCCACATCCATTTGGGGTGCCAAACTTGCCTCTTAAGCCCGGTTGCTCAAATGACGTCCCCATAAACGATTCTGGAGCCATGGGCAGCGGACTGTGGGCAAATCACAATCAACCGACTCGTAGTTATACGAAGGTTCAAAAACGCGGATCTGTAGGGAGATGTATCGACGTGACTCGATACAGAGGATACGGAGATCTAAGGTTTGATCTTGCTCGCATGTTCGGGATTGAAGGGCAGCTTGAAGATCCTCAGAGAACTGATTGGAAGCTCGTTTATGTAGATCACGAAAGCGACATACTTCTTGTCGGGGACGATCCGTGGGAAGAGTTCGTAAGCTGTGTGCAGAGCATAAAGATCCTTTCGTCGGCCGAAGTACAGCAAATGAGCTTGGACGGAGATTTGGGCCAAATTCAAATTCAAAATCACACATGCAGCGGGACGGACAGCGAAAACGCGTGGAGAGACGACCATTCTGCAGCCTCCTTCAATCGATAG 3273 47.3 GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASINKETDFVPNYPNLPSKLICMLQNVTLHADLETDEVYAQMTLQPASKSGLEANMLISPFFQYDKEALLASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYTMQPPAQELVARDLHDTSWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANKQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEELGVRRYMGTITGISDLDVVRWKSSQWRNLQVGWDESAAGARPTRVSIWEVEPVITPFYICPPPFFRPKLPKQLGMADDESEIENAFKRAMPWLGDDFGVKDSQSPIFPGLSLVQWMSMQQSNQFPSAQSGFLPSMLSPNAHSLHNSLSTDDPSKLLSFQTPALSSPTPPYNKPNQQGQVIQLQQPASAWPQQQQPQPQPQPQPQPQQLLQIPTSQQLERQQPQQLAHIQPQHQPNKQVLPQQQLTQQSPSNNGVLVGNQIQNQTLQQPLLYSQLQLQQLMAGNGQTQQHSMNKSFQMTSLPQDSFFQQQTDQQTSLVPRHQQPAQLQQSQLQLLQPGLSQKAQQNQPAQQLAQQMTSDQQLQLQMLQKLQQQQQQQQQVLFPANPLLQSQAVQLQQGQGQGQGQGHQQNQYSSQLPQSHLQQQQNTNGFSTSGHLQSQQAPINQAQPQPKGQFKPLSAMRAQSMTDGDAPSCSTSPSSNYCHVPASNLLNRRQGPVTQAECSVIEPSNNPLQELQSKYDSRIKHEFPCEKGSDLIKFKSTVNDQLEASSSGTSYCIDAGTIRQPFDNDVQSHHRMNIPFTSNIDGLMPDTSLSREYDSQNLLSNYSSIPRDIETELSSAPISPHPFGVPNLPLKPGCSNDVPINDSGAMGSGLWANHNQPTRSYTKVQKRGSVGRCIDVTRYRGYGDLRFDLARMFGIEGQLEDPQRTDWKLVYVDHESDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQIQIQNHTCSGTDSENAWRDDHSAASFNR 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46669733 46675010 + Bma024097.1 Bma06g01012 84514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01012 1090 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Bma06g01012 1090 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 1080 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma06g01012 1090 CDD B3_DNA 125 226 IPR003340 GO:0003677
Bma06g01012 1090 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Bma06g01012 1090 SMART B3_2 126 228 IPR003340 GO:0003677
Bma06g01012 1090 SUPERFAMILY CAD & PB1 domains 963 1044 - -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 1071 1090 - -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 768 782 - -
Bma06g01012 1090 Gene3D - 962 1055 - -
Bma06g01012 1090 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 446 559 - -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 446 495 - -
Bma06g01012 1090 PANTHER AUXIN RESPONSE FACTOR 19 2 1080 - -
Bma06g01012 1090 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma06g01012 1090 Gene3D - 289 359 - -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 496 510 - -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 696 755 - -
Bma06g01012 1090 Pfam AUX/IAA family 967 1052 IPR033389 -
Bma06g01012 1090 ProSiteProfiles PB1 domain profile. 966 1059 IPR000270 GO:0005515
Bma06g01012 1090 MobiDBLite consensus disorder prediction 696 782 - -
Bma06g01012 1090 MobiDBLite consensus disorder prediction 511 559 - -
Bma06g01012 1090 Gene3D - 123 227 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00269 Bma06g01012 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01012 Bma-Chr6:46669733 Bma07g00655 Bma-Chr7:10909727 4.88E-58 dispersed
Bma07g00661 Bma-Chr7:11296912 Bma06g01012 Bma-Chr6:46669733 4.24E-81 dispersed
Bma01g00269 Bma-Chr1:2235875 Bma06g01012 Bma-Chr6:46669733 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57498 PF02362 B3 2.60E-19 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01012 K14486 - rcu:8259066 1330.85