Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01028 ATGGACAACACTTTAGAAGATTACAATCTCTACTGGGAAACAAACACTCTCTTCCAAGCACAAGATATCGACGACAGTCAGGGAGTCGACGACTTGCTGAATCAGTACTACGACACTAACTCGTCGGACGGAGCAGCTTTATCGCCGGTGGAAGCCTCCAAGAACATTGTCTCCGAGAGGAACAGGAGGAAGAAGCTCAACGACAGGCTCCTAGCACTTAGAGTAGTAGTTCCAAATATCACAAAGATGGATAAGGCTTCTATCATTAGAGATGCAATAAAGTACATAGAAGAACTGCACGAGGAAGAGATGAAAATACAGGCGGAGATTATGGAGCTGGAGAATGGGAGAACCGACAAGAGCACTTCATGTGACGCCATCGATGATCATCTGGCTGCTCTAGTCTTCTCCAGATCAGAGATGAAGAAGAAGAACAACAGTCCACAGACTCTGAATTCTAACGAAGAAATGAGTTTCCCTATTGAAGTTCTTGAGTTGAGCTTGACAAGCCTTGGAGAGAAGACAGTGGTAGTGAAGGTGAGATGCAGGGCAAAGAGGAGAACAGCAGTGAATATTTGCAGGGTTTTCGAATCATTGAAGCTCAAAGTGATGACCTCTAATATTACCTCTGTTTCAGACACCCTTTTGAAGACGGTCTTCGTGGAGGCAAGTTATTTCCTTTCAATTCTTCTAGTTTTTGAAATTTGTACTATTTGTTACATCAAAATTAGATCCATAATATGGTGA 747 42.84 MDNTLEDYNLYWETNTLFQAQDIDDSQGVDDLLNQYYDTNSSDGAALSPVEASKNIVSERNRRKKLNDRLLALRVVVPNITKMDKASIIRDAIKYIEELHEEEMKIQAEIMELENGRTDKSTSCDAIDDHLAALVFSRSEMKKKNNSPQTLNSNEEMSFPIEVLELSLTSLGEKTVVVKVRCRAKRRTAVNICRVFESLKLKVMTSNITSVSDTLLKTVFVEASYFLSILLVFEICTICYIKIRSIIW 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 46986271 46987381 + Bma024116.1 Bma06g01028 84530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01028 248 SMART finulus 56 105 IPR011598 GO:0046983
Bma06g01028 248 Gene3D - 49 116 IPR036638 GO:0046983
Bma06g01028 248 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 230 - -
Bma06g01028 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Bma06g01028 248 Coils Coil 96 116 - -
Bma06g01028 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 54 115 IPR036638 GO:0046983
Bma06g01028 248 Pfam Helix-loop-helix DNA-binding domain 57 99 IPR011598 GO:0046983
Bma06g01028 248 PANTHER TRANSCRIPTION FACTOR BHLH35 6 230 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g01028 Bma11g00703 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01028 Bma-Chr6:46986271 Bma11g00703 Bma-Chr11:16745683 5.20E-61 dispersed
Bma06g01583 Bma-Chr6:52076229 Bma06g01028 Bma-Chr6:46986271 1.84E-06 dispersed
Bma06g01028 Bma-Chr6:46986271 Bma14g00439 Bma-Chr14:5095538 3.56E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57501 PF00010 HLH 1.90E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01028 - - qlo:115965323 213.001