Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01054 ATGCAGCTTGATGGAAGTTATTGTTGCGCTTCTTGTGGTAAAGTTTCTGGGATACTTGGATGTTGGAAAAAGCAGCAAATTATAGCAAGAGATGCTCGTCGACTTGATGTACTCTGTTATCGAATATATTTGAGTCACAGGCTCCTTGATGGAACCTCAAGGTTTGAAGAACTTCAAGAGGTTATAAAAGACGCCAAGGCTAAACTTGAAACTGAAGTTGGTCCAGTGAACGGAAATTCTGTTAAAATGCCTCGTGGTATTGTCAGCAGACACCCTATCGCAGGGGAAGTGCAGAAACTCTGCACTCTTGCAATTGAAAAGGCAGACAAGTGGTTGGCTGCTGTCTCAAATGTGAATCCAAAAAGCAGAGAGTATTCACTTCCAGCTGCTTGCAAGTTTCTGTTTGAAGAGATAACATCTTCCTCCATTGTAATTATTTTAATTGAACCTTCTGGTGCATTCTCTAATGAAATTAAAGGCTACAAGCTTTGGTACAACAAGGCTAGAGAAGAGACGAATACGAAAGAGAGTGACCCTGTTAGTGTATTTCCAAGAACGCAAAGAAGGATTTTAATATCCAACTTACTGCCGTGCACAGAGTATACCTTTAGGATCTTGTCATATACAGATGAAGGTGACTTGGGTCACTCGGAGGCTAAGTGTTTTACTCGAAGTGTGGAGATTATTAAAAACACTCCCAAGTCAACAGTCGCTCAGAATTGTAAGAAAATACATCCCTCTACTGAAGGAATTTCTTGTAGCAAGAGAGGGCCAAATTATACTACAGTAGTTACTTCTTCTGTGGGGTTCAAAGTTCGAGATCTGGGAAAGATTCTGCGTAATGCTTGGGCTAAAGAGGAAGTCTTGGTTGATGGGTTATGCACTGCTGAAACAGACAAGTGCTGTGAAAATGGAATCTCTAAAGTGGTCAAGCCTGAAGGGGAAGAACAACAATTGCCCTCTGTTTCTCGAGAACTGGATTTAAATGTCGTTTCAGTGCCTGATTTAAACGAAGAGCTTACACCTCCATTGGACTCATCTAGGAATGAAGATAATGGATGCACTTTGCACCCGGCTGTAGAGGCAGATGATGATGCTGTGTCTACTGACATAGAGAAGCCTAGTTCAAAAAGGTCAAACGCCAGCAATGGCTCCAAAACCTGCACCTTTGGTCCATCCGCAGAAGTCCCAGCCATCGATTCGCATGTTAAACTGAACAGGAAAAGAACAGCCAGCACAATGGAAGAGATGCACGATTGTGACAGTACTCTAGTTAGTGGCTCTCTGATCCAAAAATCAAATGGTTCACTTTTCTTTGATGAGAACTTTGAGTATTGTGTGAAGATAATCAGATGGCTGGAATGCGAGGGTCACATTAAACAGGAGTTCAGGTTGAAACTGCTAACCTGGTTTAGCTTAAGATCGACGGAGCAAGAACGGAGAGTAGTTATCACTTTTATTCAAACCCTCATCGATGATCCTTGTAGCTTAGCAGGACAATTGGTTGATTCCTTTTCAGATCTTATTTCCTGCAAGAAACCTTGGAATGGATTCTGCAGTAAGATATAA 1569 41.81 MQLDGSYCCASCGKVSGILGCWKKQQIIARDARRLDVLCYRIYLSHRLLDGTSRFEELQEVIKDAKAKLETEVGPVNGNSVKMPRGIVSRHPIAGEVQKLCTLAIEKADKWLAAVSNVNPKSREYSLPAACKFLFEEITSSSIVIILIEPSGAFSNEIKGYKLWYNKAREETNTKESDPVSVFPRTQRRILISNLLPCTEYTFRILSYTDEGDLGHSEAKCFTRSVEIIKNTPKSTVAQNCKKIHPSTEGISCSKRGPNYTTVVTSSVGFKVRDLGKILRNAWAKEEVLVDGLCTAETDKCCENGISKVVKPEGEEQQLPSVSRELDLNVVSVPDLNEELTPPLDSSRNEDNGCTLHPAVEADDDAVSTDIEKPSSKRSNASNGSKTCTFGPSAEVPAIDSHVKLNRKRTASTMEEMHDCDSTLVSGSLIQKSNGSLFFDENFEYCVKIIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVITFIQTLIDDPCSLAGQLVDSFSDLISCKKPWNGFCSKI 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47356756 47358901 - Bma024143.1 Bma06g01054 84556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01054 522 ProSiteProfiles Fibronectin type-III domain profile. 127 228 IPR003961 GO:0005515
Bma06g01054 522 PANTHER VIN3-LIKE PROTEIN 2-RELATED 1 521 IPR044514 GO:0010048|GO:0040029
Bma06g01054 522 PANTHER VIN3-LIKE PROTEIN 1 1 521 - -
Bma06g01054 522 MobiDBLite consensus disorder prediction 337 393 - -
Bma06g01054 522 Pfam Fibronectin type III domain 135 215 IPR003961 GO:0005515
Bma06g01054 522 SUPERFAMILY Fibronectin type III 133 213 IPR036116 GO:0005515
Bma06g01054 522 MobiDBLite consensus disorder prediction 373 390 - -
Bma06g01054 522 CDD FN3 135 213 IPR003961 GO:0005515
Bma06g01054 522 Gene3D Immunoglobulins 112 219 IPR013783 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g01054 Bma07g00477 CCT
Bma06g01054 Bma07g00477 ECH
Bma01g00377 Bma06g01054 BCT
Bma01g00411 Bma06g01054 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01778 Bma-Chr1:60522800 Bma06g01054 Bma-Chr6:47356756 0 dispersed
Bma01g00411 Bma-Chr1:3442039 Bma06g01054 Bma-Chr6:47356756 0 wgd
Bma06g01054 Bma-Chr6:47356756 Bma07g00477 Bma-Chr7:5781557 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01054 - - rcu:8278598 728.013