Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01078 ATGGTGCAATCAAAGAAGTTCAGAGGAGTCAGGCAGAGACATTGGGGCTCATGGGTATCAGAAATTCGCCATCCCTTGCTGAAAAGAAGGGTTTGGCTTGGAACTTTTGAGACCGCAGAAGAAGCAGCCAGAGCTTACGATCAAGCAGCCATTTTAATGAGTGGAAGAAACGCAAAGACGAATTTTCCAGTCCCTCAAACTCCCACAGGCGATTCTGAGAAAAACAAACTTTCGCCATTGTCGCCCAAGAGCTTATCAGAAATTCTTCACCAAAAGCTCAGAAAATGCAGCAAAACACCGTCTCCTTCAATGACTTGTTTGAGGCTAGACAACGAAAATTCCCATATCGGAGTTTGGCAAAAGCGGGCCGGGCAAAGTTCAAACTCCAATTGGGTAATGACTGTTGAGCTTGGAAAGAAGGAATCTGAACAGAATATTTCGTCTTCTTCATCATCATCGTCTCCTGATCAGCTTCCGCCATTGGAGGTAAACCCTGAGCTTCCCAGAGAGATAAATGAAGAAGAAAAACTTGCACTGCAAATGATAGAGGAACTGCTTATAGGAAACAGTCCAAACCCTTCATTTGAGTGTCAAGAAGATCCAGGTCCTAGTTTTTTTACCTGTGATTGA 630 43.97 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVPQTPTGDSEKNKLSPLSPKSLSEILHQKLRKCSKTPSPSMTCLRLDNENSHIGVWQKRAGQSSNSNWVMTVELGKKESEQNISSSSSSSSPDQLPPLEVNPELPREINEEEKLALQMIEELLIGNSPNPSFECQEDPGPSFFTCD 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47608439 47609201 - Bma024171.1 Bma06g01078 84580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01078 209 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bma06g01078 209 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Bma06g01078 209 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Bma06g01078 209 MobiDBLite consensus disorder prediction 59 79 - -
Bma06g01078 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 197 - -
Bma06g01078 209 MobiDBLite consensus disorder prediction 140 159 - -
Bma06g01078 209 MobiDBLite consensus disorder prediction 140 174 - -
Bma06g01078 209 MobiDBLite consensus disorder prediction 189 209 - -
Bma06g01078 209 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Bma06g01078 209 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bma06g01078 209 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bma06g01078 209 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bma06g01078 209 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 197 - -
Bma06g01078 209 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01066 Bma-Chr6:47475190 Bma06g01078 Bma-Chr6:47608439 1.40E-152 dispersed
Bma06g01078 Bma-Chr6:47608439 Bma11g00863 Bma-Chr11:31135087 4.93E-90 dispersed
Bma09g00886 Bma-Chr9:48133704 Bma06g01078 Bma-Chr6:47608439 3.78E-33 transposed
Bma01g01270 Bma-Chr1:17156055 Bma06g01078 Bma-Chr6:47608439 9.81E-30 transposed
Bma01g00437 Bma-Chr1:3640282 Bma06g01078 Bma-Chr6:47608439 9.90E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57506 PF00847 AP2 8.00E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01078 - - qsu:112002896 289.271