Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01086 ATGAAGAGGGAACACTGCCAGGTGAATCTTCAGTCTGATTCATCTTCAATGGCCGGGAAATCTAAGGTTTGGGAAGATGAGTCGCAACGAGATGGAGGTATGGATGAACTTCTGGCTGTTTTGGGATACGAAGTGAGGTCGTCGGACATGGCCGACGTTGCCCTGAAGCTAGAACAGCTTGAAGAATTTATGGGTAATGTTCAGGAAGATGGTCTCTCGCATCTTGCATCGGAAACTGTCCATTATAATCCCTCCGACCTTTCCACCTATCTTGAAAGCATGATTTACGAGCTTAACCCATCTCCAACTTTCGATTCCGTTGTTGGCTCGCTGTCTCAAACGCTGGGAGACGATCCGTTTCTAGCTCCGGCTGATTCCTCCACCATAACCTCCGTTGATTTCTCAAAACAGAGAAACCAGAGGTTGTTCGAAGGGTCTTCTTGTTCAGATTATGATCTGAAAGCTATTCCTGGTGAGGCTATTTTAAAACAAAATACTCAGTTTGAAGAAACTTCGGATAGAGAGAAGAAACGATTGAAACCCTCATCTGGGCCGGAATCGGAATTGCTTTCCGATTCAATTACTCGGCCTGTCATCCTAGTTGACTCGCAAGAAAACGGAATTCAACTCGTACAGACTCTGATGGCTTGCGCCGAAGCTGTTCACCAAAACAGCCTAAATCTGGCTGAGGCTCTCCTCGAACGAGTCGGCTATCTCGTCGGGTCTCAAACTGGAGCTATGCGGAAAGTCGCCGCCTACTTTGCCGAAGCTCTAGCTCGGAGGATTTACAGGCTCTACCCTCAGAACGCCCTCGACCATTCTATTTCCGATTTGCTTCAAGTTCATTTCTACGAGAGCTGTCCTTATCTTAAATTTGCTCATTTCACAGCAAATCAAGCGATTCTCGAAGCCTTTGAAGGTAAAAATCGAGTCCACGTTATTGATTTTTCTATGAATCAAGGTATGCAATGGCCGGCGCTTCTTCAAGCTCTGGCTCTGCGACCTGGTGGTCCACCTATTTTCCGGCTCACTGGAATTGGGCCTCCGGCGCCGGATAATTCAGATTACCTCCGAGAAGTGGGTTGGAAGCTCGCCCGATTAGCTGAAATGATTCACGTTAAGTTTGAATACCGTGGGTTTGTTGCCAACAGCTTGGCAGATCTTGATTCTTCGATGCTCGAACTTAGGCCGAGTGAGACCGAGACAGTGGCGGTCAACTCAGTTTTCGAGTTTCATAAGCTCTTGGCTCGGCCGGGAGCGATCGGAAAAGTGTTGTCGGTCGTGAAGCAGATGAAGCCGGCGGTTATGACTGTAGTTGAGCAAGAAGCTAGCCATAACGGCCCGGTCTTTCTGGACCGGTTCACCGAGTCACTCCACTATTACTCGACTCTTTTTGACTCGTTGGAAGGCTCAGCCACCGTTAACAATCAAGACAAGGTAATGACAGAGATGTACTTCGGGAAGCAAATATGTAACGTGGTTGCATGTGAAGGCGCAGACCGGGTAGAGCGGCATGAGAATATGACTCGGTGGCGAACTCGGTTCACCTCAGCTGGGTTCAACTCGGCTTATTTAGGGTCTAACGCGTTCAAACAAGCCAGCATGTTGCTTGCTCTGTTCGGAAGTGGAGATGGGTACGGAGTAGAAGAGCGAAATGGGTGCCTGATGCTGGGCTGGCACAGCAGACCTCTGATCACCACCTCGGCTTGGACGGTGGAAGAGAAAGGAAACAGACTCAGTGAGTCAGCTCGGTAA 1755 48.95 MKREHCQVNLQSDSSSMAGKSKVWEDESQRDGGMDELLAVLGYEVRSSDMADVALKLEQLEEFMGNVQEDGLSHLASETVHYNPSDLSTYLESMIYELNPSPTFDSVVGSLSQTLGDDPFLAPADSSTITSVDFSKQRNQRLFEGSSCSDYDLKAIPGEAILKQNTQFEETSDREKKRLKPSSGPESELLSDSITRPVILVDSQENGIQLVQTLMACAEAVHQNSLNLAEALLERVGYLVGSQTGAMRKVAAYFAEALARRIYRLYPQNALDHSISDLLQVHFYESCPYLKFAHFTANQAILEAFEGKNRVHVIDFSMNQGMQWPALLQALALRPGGPPIFRLTGIGPPAPDNSDYLREVGWKLARLAEMIHVKFEYRGFVANSLADLDSSMLELRPSETETVAVNSVFEFHKLLARPGAIGKVLSVVKQMKPAVMTVVEQEASHNGPVFLDRFTESLHYYSTLFDSLEGSATVNNQDKVMTEMYFGKQICNVVACEGADRVERHENMTRWRTRFTSAGFNSAYLGSNAFKQASMLLALFGSGDGYGVEERNGCLMLGWHSRPLITTSAWTVEEKGNRLSESAR 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47704024 47705778 - Bma024180.1 Bma06g01086 84588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01086 584 ProSiteProfiles GRAS family profile. 201 571 IPR005202 -
Bma06g01086 584 Gene3D - 33 98 IPR038088 -
Bma06g01086 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 572 IPR005202 -
Bma06g01086 584 MobiDBLite consensus disorder prediction 168 183 - -
Bma06g01086 584 Pfam GRAS domain family 210 571 IPR005202 -
Bma06g01086 584 MobiDBLite consensus disorder prediction 166 190 - -
Bma06g01086 584 MobiDBLite consensus disorder prediction 8 22 - -
Bma06g01086 584 PANTHER DELLA PROTEIN GAI1-RELATED 2 572 IPR030006 GO:0003712|GO:0005634
Bma06g01086 584 Pfam Transcriptional regulator DELLA protein N terminal 35 102 IPR021914 -
Bma06g01086 584 SMART DELLA_2 35 108 - -
Bma06g01086 584 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01086 K14494 DELLA; DELLA protein - tcc:18609825 831.632
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g01086 Bma07g00461 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01147 Bma-Chr1:12442892 Bma06g01086 Bma-Chr6:47704024 0 dispersed
Bma02g00512 Bma-Chr2:10189118 Bma06g01086 Bma-Chr6:47704024 0 dispersed
Bma02g00522 Bma-Chr2:10425819 Bma06g01086 Bma-Chr6:47704024 6.63E-57 dispersed
Bma06g01070 Bma-Chr6:47558156 Bma06g01086 Bma-Chr6:47704024 0 dispersed
Bma06g01086 Bma-Chr6:47704024 Bma07g00461 Bma-Chr7:5575831 9.66E-127 dispersed
Bma07g01634 Bma-Chr7:51948785 Bma06g01086 Bma-Chr6:47704024 2.34E-13 dispersed
Bma14g01585 Bma-Chr14:32684803 Bma06g01086 Bma-Chr6:47704024 9.43E-67 dispersed
Bma06g01086 Bma-Chr6:47704024 Bma01g00461 Bma-Chr1:3829901 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g409 . . . . . . Bma07g00461 . . Cmo11g00583 . . . . Sed08g0736 Cpe04g01154 Cpe18g00461 Bhi02g01068 Tan09g1343 Cmetu02g1460 . Hepe09g0722 . . . . . . . . . . . . . Lsi06g00916 . . Cme02g01276 . . . Bda09g01170 Bpe08g00454 . . Bma06g01086 . . . Cma10g00586 Cma11g00578 Car10g00542 Car11g00457 . . . . . . . . . Cla06g01047 Cam06g1173 Cec06g1212 Cco06g1218 Clacu06g1131 Cmu06g1103 Cre06g1912 . Csa01g02098 Chy02g01949 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01386 . 76 743 GRAS Transcription Factor Family AT2G37650 56.2 4.4e-207 718.0
Bma04g00970 BCT,CCT 178 539 GRAS Transcription Factor Family AT2G45160 51.4 3.5e-94 342.8
Bma04g01386 . 287 744 GRAS Transcription Factor Family AT3G46600 52.0 9.3e-128 454.1
Bma05g00091 . 37 453 GRAS Transcription Factor Family AT3G49950 61.5 5.1e-139 491.1
Bma03g01138 . 1 318 GRAS Transcription Factor Family AT3G49950 58.6 9.1e-96 347.4
Bma07g00096 . 99 788 GRAS Transcription Factor Family AT1G07530 51.8 1.6e-194 676.4
Bma14g00512 . 179 613 GRAS Transcription Factor Family AT1G07530 53.3 3.0e-132 469.5
Bma10g00631 . 21 453 GRAS Transcription Factor Family AT5G41920 64.6 1.8e-144 509.2
Bma14g01585 . 331 711 GRAS Transcription Factor Family AT5G41920 56.2 1.5e-114 409.8
Bma01g00877 CCT,ECH 267 446 GRAS Transcription Factor Family AT5G52510 51.1 1.4e-45 181.4
Bma06g00126 . 1 593 GRAS Transcription Factor Family AT5G66770 53.8 5.2e-161 564.7
Bma13g01108 . 18 508 GRAS Transcription Factor Family AT1G50600 57.8 3.1e-165 578.6
Bma02g01308 BCT 92 513 GRAS Transcription Factor Family AT1G50600 63.6 4.5e-156 548.1
Bma07g00028 . 108 546 GRAS Transcription Factor Family AT1G50600 56.1 1.6e-137 486.5
Bma11g00034 . 103 541 GRAS Transcription Factor Family AT1G50600 56.1 1.4e-136 483.4
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT1G50600 69.1 2.6e-135 479.2
Bma14g00364 . 194 572 GRAS Transcription Factor Family AT1G50600 61.2 4.9e-134 474.9
Bma01g02109 CCT,ECH 210 579 GRAS Transcription Factor Family AT1G50600 51.1 1.1e-104 377.5
Bma14g00583 . 1 621 GRAS Transcription Factor Family AT1G63100 53.1 8.4e-168 587.4
Bma06g01086 CCT 33 572 GRAS Transcription Factor Family AT1G14920 65.5 4.8e-198 687.6
Bma01g00461 . 33 577 GRAS Transcription Factor Family AT1G14920 64.9 1.3e-195 679.5
Bma02g00512 . 47 586 GRAS Transcription Factor Family AT1G14920 63.0 2.6e-191 665.2
Bma01g01147 . 45 574 GRAS Transcription Factor Family AT1G14920 63.7 9.5e-186 646.7
Bma06g01070 . 1 358 GRAS Transcription Factor Family AT1G14920 76.6 1.6e-161 566.2
Bma02g00512 . 26 587 GRAS Transcription Factor Family AT1G66350 61.8 3.0e-189 658.3
Bma01g01147 . 40 575 GRAS Transcription Factor Family AT1G66350 63.3 4.7e-182 634.4
Bma01g00461 . 1 576 GRAS Transcription Factor Family AT1G66350 54.9 2.1e-166 582.4
Bma06g01086 CCT 1 573 GRAS Transcription Factor Family AT1G66350 54.9 3.4e-164 575.1
Bma06g01070 . 1 359 GRAS Transcription Factor Family AT1G66350 63.9 2.2e-131 466.1
Bma07g00096 . 233 788 GRAS Transcription Factor Family AT1G07520 52.5 5.6e-154 541.2
Bma02g01308 BCT 5 513 GRAS Transcription Factor Family AT5G48150 62.1 1.2e-179 626.3
Bma13g01108 . 78 508 GRAS Transcription Factor Family AT5G48150 63.9 1.4e-162 569.7
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT5G48150 78.8 4.7e-155 544.7
Bma07g00028 . 16 546 GRAS Transcription Factor Family AT5G48150 52.9 3.6e-147 518.5
Bma11g00034 . 12 541 GRAS Transcription Factor Family AT5G48150 51.5 4.5e-142 501.5
Bma14g00364 . 79 572 GRAS Transcription Factor Family AT5G48150 52.9 6.1e-139 491.1
Bma01g02109 CCT,ECH 188 579 GRAS Transcription Factor Family AT5G48150 51.8 2.0e-113 406.4
Bma06g01086 CCT 35 572 GRAS Transcription Factor Family AT2G01570 66.2 4.7e-202 701.0
Bma01g00461 . 35 577 GRAS Transcription Factor Family AT2G01570 64.7 2.9e-196 681.8
Bma02g00512 . 49 584 GRAS Transcription Factor Family AT2G01570 63.9 4.0e-193 671.4
Bma01g01147 . 47 572 GRAS Transcription Factor Family AT2G01570 62.5 2.6e-184 642.1
Bma06g01070 . 1 358 GRAS Transcription Factor Family AT2G01570 78.6 1.9e-163 572.8
Bma02g00512 . 26 587 GRAS Transcription Factor Family AT1G66350 61.8 3.0e-189 658.3
Bma01g01147 . 40 575 GRAS Transcription Factor Family AT1G66350 63.3 4.7e-182 634.4
Bma01g00461 . 1 576 GRAS Transcription Factor Family AT1G66350 54.9 2.1e-166 582.4
Bma06g01086 CCT 1 573 GRAS Transcription Factor Family AT1G66350 54.9 3.4e-164 575.1
Bma06g01070 . 1 359 GRAS Transcription Factor Family AT1G66350 63.9 2.2e-131 466.1
Bma02g00512 . 49 584 GRAS Transcription Factor Family AT3G03450 62.8 7.4e-186 647.1
Bma01g01147 . 47 572 GRAS Transcription Factor Family AT3G03450 63.2 2.2e-182 635.6
Bma01g00461 . 10 577 GRAS Transcription Factor Family AT3G03450 55.7 2.5e-165 578.9
Bma06g01086 CCT 35 572 GRAS Transcription Factor Family AT3G03450 57.8 2.5e-165 578.9
Bma06g01070 . 2 358 GRAS Transcription Factor Family AT3G03450 65.7 1.9e-136 483.0
Bma01g01147 . 46 573 GRAS Transcription Factor Family AT5G17490 60.6 1.1e-165 580.1
Bma02g00512 . 48 585 GRAS Transcription Factor Family AT5G17490 59.4 3.1e-165 578.6
Bma06g01086 CCT 1 578 GRAS Transcription Factor Family AT5G17490 50.2 2.7e-145 512.3
Bma01g00461 . 1 577 GRAS Transcription Factor Family AT5G17490 51.0 7.4e-143 504.2
Bma06g01070 . 2 356 GRAS Transcription Factor Family AT5G17490 62.1 2.7e-124 442.6
Bma01g02109 CCT,ECH 1 579 GRAS Transcription Factor Family AT1G21450 60.0 1.1e-182 636.7
Bma02g01308 BCT 138 513 GRAS Transcription Factor Family AT1G21450 51.2 4.1e-113 405.6
Bma14g00364 . 204 572 GRAS Transcription Factor Family AT1G21450 53.2 1.5e-110 397.1
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT1G21450 53.2 2.7e-104 376.3
Bma04g01386 . 348 744 GRAS Transcription Factor Family AT5G59450 53.6 1.8e-124 443.4
Bma11g00034 . 1 541 GRAS Transcription Factor Family AT4G17230 61.4 8.8e-176 613.6
Bma07g00028 . 1 546 GRAS Transcription Factor Family AT4G17230 58.3 2.2e-171 599.0
Bma02g01308 BCT 16 513 GRAS Transcription Factor Family AT4G17230 50.5 7.1e-133 471.1
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT4G17230 61.5 6.0e-116 414.8
Bma02g01308 BCT 134 513 GRAS Transcription Factor Family AT2G04890 67.4 5.0e-150 527.7
Bma13g01108 . 115 508 GRAS Transcription Factor Family AT2G04890 62.7 1.4e-147 519.6
Bma12g00842 BCT 1 343 GRAS Transcription Factor Family AT2G04890 69.7 3.1e-136 481.9
Bma14g00364 . 178 572 GRAS Transcription Factor Family AT2G04890 56.6 2.0e-127 452.6
Bma11g00034 . 128 541 GRAS Transcription Factor Family AT2G04890 56.0 7.2e-125 444.1
Bma07g00028 . 166 546 GRAS Transcription Factor Family AT2G04890 59.3 1.6e-124 443.0
Bma14g00764 . 1 464 GRAS Transcription Factor Family AT1G50420 66.7 5.8e-174 607.4
Bma03g00439 . 1 464 GRAS Transcription Factor Family AT1G50420 58.2 6.0e-155 544.3
Bma04g00970 BCT,CCT 183 539 GRAS Transcription Factor Family AT4G00150 58.2 5.7e-109 391.7
Bma14g01585 . 117 709 GRAS Transcription Factor Family AT3G54220 68.6 2.9e-205 711.8
Bma10g00631 . 86 451 GRAS Transcription Factor Family AT3G54220 62.8 1.5e-129 460.3
Bma09g00766 . 41 404 GRAS Transcription Factor Family AT3G54220 54.6 5.9e-113 405.2
Bma09g00015 BCT 1 485 GRAS Transcription Factor Family AT4G37650 53.9 2.0e-151 532.7
Bma09g00014 . 1 485 GRAS Transcription Factor Family AT4G37650 53.9 2.0e-151 532.7
Bma15g01112 . 53 260 GRAS Transcription Factor Family AT4G37650 65.7 1.1e-77 287.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57507 PF03514 GRAS 4.30E-133 CL0063 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01086 Bma_Chr06 FPKM 17.061781 20.093866 20.15033 18.128403 19.439764 18.59248 21.449253 29.250586 27.973619 29.195053