Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01092 ATGCATAAGGAAACATCCGCCGCCTCCCATGGCGGTCACACTACTAGTAGCATAACCGCCATATCGTCTTCTTTCCTTAAGTCCTGCCTTCAACCGAGTGAGGACTTTTATGGTCCTCTATATTCACCTATCTTCCCAGATAAACAATCTTTTCCTAGCTCTCTCTCTTTTACTCCGTATGGAATCTCAGAATCGAATTCAGCATCAGCTTCAGCCTCGGAAGTTATAAGCAAACACCTTTACTTCACCCGCGCTGTCCAAGAGCACCAAGAAATTGTCAATCGGCACAGTCTCTGCCTAACTCATCTTCGCGAAGCCACCGAAGAAGCAAAGATTCTTCGCCACGAGAACACCAGACTCCGCTGTGTTAACAGCGAGCTCAACAAGCATCTGAGCGTCATGATGCACGATCAGGTCCAGCCGCAAACCGTTTCTTCTGACTACTGGATGTCATACGACATTGCCAATGGATTTCGTGGACTTCATGTTTGCGGTAAGCAAAAGGTCTACGTGCCGGCTGGGAAGAAAGAGGACGAGCCCCTTGAACTGGAGGTGTACAACCAAGGAATGTTCAAGACTGAACTCTGCAACAAATGGCAGGAAACCAGCGCTTGCTCGTACGGAGATCACTGCCAGTTTGCACATGGCATTGAGGAGCTCCGCCCTGTAATCCGCCACCCCCGCTACAAGACGGAGGTCTGCAGGATGGTTCTCTCTGGTGTTGTCTGTACTTATGGTCATCGATGCCACTTCCGCCATGCACTCACTGATCAGGAGAGGCTTATGGGTGCCCTCAATCCCCCCTCGACGATTAAGCTGGAAAGGTAA 828 50.12 MHKETSAASHGGHTTSSITAISSSFLKSCLQPSEDFYGPLYSPIFPDKQSFPSSLSFTPYGISESNSASASASEVISKHLYFTRAVQEHQEIVNRHSLCLTHLREATEEAKILRHENTRLRCVNSELNKHLSVMMHDQVQPQTVSSDYWMSYDIANGFRGLHVCGKQKVYVPAGKKEDEPLELEVYNQGMFKTELCNKWQETSACSYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLSGVVCTYGHRCHFRHALTDQERLMGALNPPSTIKLER 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47739239 47741197 + Bma024186.1 Bma06g01092 84594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01092 275 SUPERFAMILY CCCH zinc finger 187 222 IPR036855 GO:0046872
Bma06g01092 275 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872
Bma06g01092 275 SUPERFAMILY CCCH zinc finger 224 258 IPR036855 GO:0046872
Bma06g01092 275 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Bma06g01092 275 SMART c3hfinal6 228 255 IPR000571 GO:0046872
Bma06g01092 275 Gene3D - 224 260 - -
Bma06g01092 275 Gene3D - 184 223 - -
Bma06g01092 275 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 216 IPR000571 GO:0046872
Bma06g01092 275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 58 146 - -
Bma06g01092 275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 162 266 - -
Bma06g01092 275 Coils Coil 103 123 - -
Bma06g01092 275 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
Bma06g01092 275 PANTHER CCCH ZINC FINGER/TIS11-RELATED 58 146 IPR045877 GO:0003729
Bma06g01092 275 PANTHER CCCH ZINC FINGER/TIS11-RELATED 162 266 IPR045877 GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01092 K18753 ZFP36L; butyrate response factor K18693 jre:109007647 211.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01092 Bma-Chr6:47739239 Bma13g00225 Bma-Chr13:3329052 5.32E-10 dispersed
Bma01g00454 Bma-Chr1:3764939 Bma06g01092 Bma-Chr6:47739239 1.41E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57508 PF00642 zf-CCCH 2.70E-10 CL0537 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01092 Bma_Chr06 FPKM 0.635915 2.043619 1.520373 1.200901 1.463007 0.809413 0.703718 1.547116 1.1415 1.205307