Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01093 ATGGGACTGCAGAACCAGTTGAATGATTTATCATCCGATTCGATCCCTCTTCTTCTCGTGGCCTTTGTCGCCACCTGCGTCAACTACCTCCGTTCTTCCTTCTCCGATCTCCTCCACTCAGTCGGCCTCTCCCGATATCACCCCCATTCCCACCGCCAACACCTCGACGAAGGTCTCTTCTATGCCCTCGGATCCGGGCTCGCTGGCCTGATTTTCCTCGCCGAGCAACTCCACCTGAACCGCGATTCGTCCCACCGATTCGGCGACGAAATCGACGACGCTGTCAGCGGCGGCTCCGATTGCGTGGTCTGCCTGTGTAATTTAAAGGTCGGCGATAGAGTACGCAGGCTTTCCTGCCGCCATGTCTTCCACAAGAAGTGCTTCGATGGCTGGCTCGATCATCTGAACTTCAACTGCCCTCTGTGTCGCTCTCCGCTCGTTCCCGATGAGCGCGTATCCCTCACGCGCCGCCGTGTTGGGGAGGATGTCGTCACCTGGTTGTCCATGCGGTGA 513 57.89 MGLQNQLNDLSSDSIPLLLVAFVATCVNYLRSSFSDLLHSVGLSRYHPHSHRQHLDEGLFYALGSGLAGLIFLAEQLHLNRDSSHRFGDEIDDAVSGGSDCVVCLCNLKVGDRVRRLSCRHVFHKKCFDGWLDHLNFNCPLCRSPLVPDERVSLTRRRVGEDVVTWLSMR 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 47744846 47745358 - Bma024187.1 Bma06g01093 84595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01093 170 Pfam Ring finger domain 100 143 IPR001841 -
Bma06g01093 170 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Bma06g01093 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 157 IPR013083 -
Bma06g01093 170 SMART ring_2 101 142 IPR001841 -
Bma06g01093 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 168 - -
Bma06g01093 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 168 - -
Bma06g01093 170 SUPERFAMILY RING/U-box 100 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01093 Bma-Chr6:47744846 Bma12g00872 Bma-Chr12:39798997 9.75E-15 dispersed
Bma01g00453 Bma-Chr1:3762198 Bma06g01093 Bma-Chr6:47744846 9.18E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01093 K16282 - zju:107413314 229.565