Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01132 ACTTCTTGCAGCCGGTTCTTACAAAATAGGGATCCTAGTGCCCAAAGGCGACATCCTCTGGTAGATCCAGTTGTTGTTTCTGAAATAAGAAGATGCCTTGAGGAGGGAATTGAATTTCAAGGCGAGCTTCTTAATTTCAGGAAAGATGGGACGCCCTTGGTGAACAGGCTGAGACTTGCACCCATATATGACAATGATGGAATCGTGACACATGTAATTGGGATTCAAGTATTTTCTGAAGCAAAATTAGATCTGAACCGGATTTCATATCCAGTTTTTAAAGAGACTTGCAATCAATATAATGATCATTCGGGAAAATATGCTTCTCTGACTGGGCGATCGCCATTCATCCAACGGGAGGAGTTATGTGGGATGCTTCAGCTCTCTGATGAAGTCTTGGCCCACAACATTCTATCTCGCTTGACACCAAGAGATGTTGCATCTGTTGGATCTGTGTGCCGAAGAATTCGTCAGTTGACTAAAAATGAGCAGCTAAGGAAGATGGTATGCCTAAATGCGTGGGGAAGAGAAGTCACTGGCACATTGGAACTAATTACTAAGAAGTTAGGTTGGGGTCGTTTGGCAAGGGAACTGACGACCCTCGAAGCTGTTTGCTGGAGGAAACTGACAGTTGGGGGCGCTGTTGAGCCTTCAAGGTGCAATTTTAGTGCTTGTGCTGCTGGAAACAGACTTGTGTTATTTGGAGGAGAAGGCGTTAATATGCAGCCTATGGATGATACATTTGTACTTAATCTTGATTCTGCCCATCCCGAGTGGCGTAGAGTGATTGTAAAATCATCCCCACCAGGGCGCTGGGGCCATACTCTCTCATGTTTGAATGGTTCTTGGTTGGTGGTATTTGGAGGATGTGGGAGAGAAGGATTACTAAATGATGTCTTCGTACTTGACTTAGACGCCAAACAGCCGACATGGAAAGAAGTTTCTGGTGGAACTCCTCCACTCCCTCGATCATGGCATAGCTCTTGCACGATTGAAGGATCTAAACTAGTCGTCTCCGGTGGATGTACAGATGCAGGAGTTCTTCTCAGTGACACATATTTGTTGGATCTTACAAAAGATAAGCCGACTTGGAAAGAGATTCCGACTTCGTGGACGCCCCCATCAAGGTTAGGACATTCTCTTTCAGTATATGGTAGGACAAAAATTCTCATGTTTGGTGGGCTGGCCAAAAGTGGGCACTTACGGTTGAGATCGGATGAGGCTTACACCATCGATTTAGAAGAGGAAATGCCTCAGTGGAGGCTGCTCGAGTGTAATACATTCACAGGCTTAGGCAGCCAAAGCGTTGCTGTTCCTCCTCCTAGACTCGATCATGTAGCAGTGAGCATGCCCTGTGGAAGGATCATAATATTCGGAGGTTCCATTGCGGGATTGCACTCACCTTCTCAGCTCTACCTATTAGACCCTTCGGAAGAAAAGCCATCGTGGAGGATACTAAACGTCCCCGGCCAACCACCCAAATTTGCATGGGGACATAGCACCTGTGTGGTTGGAGGTACTCGAGTTCTGGTTTTGGGAGGCAACACTGGGGACGAGTGGATACTCAATGAGTTGCACGAGCTACGCTTGGCAAGCAGACAAGACTGA 1608 46.64 TSCSRFLQNRDPSAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIYDNDGIVTHVIGIQVFSEAKLDLNRISYPVFKETCNQYNDHSGKYASLTGRSPFIQREELCGMLQLSDEVLAHNILSRLTPRDVASVGSVCRRIRQLTKNEQLRKMVCLNAWGREVTGTLELITKKLGWGRLARELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDSAHPEWRRVIVKSSPPGRWGHTLSCLNGSWLVVFGGCGREGLLNDVFVLDLDAKQPTWKEVSGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTKDKPTWKEIPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSDEAYTIDLEEEMPQWRLLECNTFTGLGSQSVAVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLYLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGNTGDEWILNELHELRLASRQD 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48226429 48228036 + Bma024228.1 Bma06g01132 84634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01132 535 SUPERFAMILY F-box domain 123 191 IPR036047 GO:0005515
Bma06g01132 535 Pfam PAS domain 21 76 IPR000014 -
Bma06g01132 535 Pfam Galactose oxidase, central domain 333 384 - -
Bma06g01132 535 Pfam Galactose oxidase, central domain 284 331 - -
Bma06g01132 535 Pfam F-box domain 126 165 IPR001810 GO:0005515
Bma06g01132 535 SMART pac_2 40 81 IPR001610 -
Bma06g01132 535 Gene3D - 121 169 - -
Bma06g01132 535 SUPERFAMILY Galactose oxidase, central domain 206 524 IPR011043 -
Bma06g01132 535 Pfam Galactose oxidase, central domain 219 269 - -
Bma06g01132 535 Pfam Kelch motif 443 490 IPR011498 GO:0005515
Bma06g01132 535 Gene3D PAS domain 1 87 - -
Bma06g01132 535 Gene3D - 199 422 IPR015915 GO:0005515
Bma06g01132 535 SUPERFAMILY PYP-like sensor domain (PAS domain) 15 76 IPR035965 -
Bma06g01132 535 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 3 534 - -
Bma06g01132 535 Gene3D - 423 534 IPR015915 GO:0005515
Bma06g01132 535 PANTHER ADAGIO PROTEIN 3 3 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01132 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - mnt:21388994 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00908 Bma-Chr6:44167143 Bma06g01132 Bma-Chr6:48226429 0 dispersed
Bma06g01132 Bma-Chr6:48226429 Bma13g01180 Bma-Chr13:45072880 9.14E-30 dispersed
Bma06g01132 Bma-Chr6:48226429 Bma08g00247 Bma-Chr8:3064727 1.26E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01132 Bma_Chr06 FPKM 9.458014 9.269236 8.626989 8.207827 7.873598 8.51964 8.049987 7.980164 8.69223 7.892903