Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01140 ATGGCACTCCCTCCCGTAGAGTGTGCGTACGTTACAGAAGATTCTCTTCGCGAGTGGAAGTCTGGAAACTTGAGCTTCAAGGTTCCTCACCCTGTCCCCATGCTTCGGTTCCTCTATGAGCTTTGTTGGACAATGGTTCGGGGTGAATTACCCTTTCAGGTGTGTAAAGCTGCATTGGATACGGTTGAATTCTTGGAAAAAGTGTCTGTGGAAGAGTTGGGGTCGAGTTTGGCTGATATTGTGACCCAAATGGCTCAAGATCTTACAATGCTGGGAGAGTTTCGTCTTCGCCTTATAAAATTGGCGAAGTGGCTGGTTGAATCAACACTGGTTCCATTAAGGATTTTTCAGGAGCGATGTGAGGAAGAATTCTTGTGGGAGGCTGAAATGATAAAAATAAGGGCTCAAGACTTGAAGAATAAAGAGGTCAGGGTTAATACACGCCTGCTTTATCAGCAAACGAAGTTTAACCTTCTACGAGAAGAGAGTGAGGGCTATGCCAAACTGGTTACCCTTCTTTGTCGGGACATTGAAGCTTCAAGTCAGAGTGTATCAGATTCAACAATAGGCATTATTAAGTCGTTAATTGGACATTTTGATTTGGACCCAAATCGTGTTTTTGACATTGTTTTGGAGTGTTTTGAGCTTCAGCCCGATAATGGAGTTTTCTTAGAGCTTATTCCCATATTTCCAAAGTCTCATGCATCACAAATTCTCGGTTTCAAATTTCAATATTATCAGCGGATGGAAGTGAGTTCTCATGTGTCATTTGGGATTTATAAGCTTACAGCCTTGTTGGTCAGAGAAGAATTTATTAATCTTGATAGCATATACGCGCATTTACTTCCTAAGGATGATGAAGCATTTGAGCATTATAATGCATTTTCTTCCAAGCGGCTTGATGAGGCTAACAAAATTGGGAAAATAAATCTTGCTGCTATTGGTAAGGACCTGATGGAAGAGGAAAAGCAAGGAGACATCACAGTTAATCTTTTTGCTGCTTTAGACATGGAAAATGATGCAGTAAATGAAAGGTCTTCGGAGCTGGAAAATAATCAAACGTTGGGCTTGCTGACGGGGTTTCTTTCTGTTGGTGACTGGTATCATGCATATATACTCTTTGGTAGACTCTCACCTATTAATCCGGTTGAGCATCGTGCAATTTGTAACAGTTTGTTTAGGCTCATTGAAGAATCAATCTCTTCAGCATATTCAATTGTTCGTAAGAGACATTCACAAAACTTGGTATCTTCCTCTGGAGCGAGCAATGACGCAATGGGCTTGGTAACTTCAGCTTATCCCTTGTTTATTGATCTTCCGGAAGAATTTTTTCAGATGCTTGGTGTTGCTGGCCCTTATCTTTTCCGTGATGCAATTTTGTTGCAGAAGGTTTGTCGAGTATTGAAAGGTTACTATGTATCTGCAATGGAGCTTGCAAATGGTGGAGGAGATTTTATTTGTGAGCCAACCATTGGTAAGAATAAGGCTCCTCGTTTGCATCTAAAGGAAGCCAGGTCAAGGATAGAGGAAGCTTTAGGAATATGCCTGCTACCTTCTTTACAGTTGATACCTGCAAATCCAGCTGTTGGGCAAGAAATATGGGAAGTAATGAGTCTCCTTCCTTATGAGGTGCGGTACCGATTATATGGAGAGTGGGAGAAAGATGATGAAAGAATTCCTTTAGTTTTAGCTGCAAGGCAAACAGCGAAGTTGGACACTAGAAGGATTTTGAAACGTCTTGCAAAGGAGAACTTAAAGCAGTTGGGTAGGATGATAGCAAAGTTAGCTCATGCCAATCCGATGACTGTTCTCCGCACCATTGTACATCAGATCGAAGCATACAGAGATATGATTACTCCGGTGGTGGATGCATTTAAATATCTTACCCAGTTAGAATATGATATTTTGGAATATGTTGTGATTGAGCGGCTGGCACAAAGTGGGCGTGACAAGTTAAAAGATGATGGCCTTAATTTGTCGGACTGGCTTCAATCTTTGGCATCATTTTGGGGACACTTGTGTAAGAAGTACCCATCTATGGAATTGAGAGGTCTTTTTCAGTATCTCGTTAACCAATTGAAAAAAGGACAAGGAATAGAACTCGTTCTCCTCCAGGAGCTCATTCAACAAATGGCAAATGTCCAGTACACTGAAAATCTCACTGAGGAACAGCTAGATGCAATGGCAGGAAGTGAGACTCTTCGCTATCAGGCAACTTCATTTGGAGTGGCTCGCAACAACAAGGCGTTGATCAAATCCAGTAATAGACTAAGGGACTCATTACTTCCTAAGGACGAATCAAAGTTGGCAATTCCTCTCCTGTTACTTATTGCTCAACATCGTTCTGTTGTTGTTATAAGTGCAACTGCCCCTTACATTAAGATGGTCAGTGAGCAATTTGATAGATGCCATGGTACGCTACTTCAGTATGTAGATTTCTTAACCACTGTGGTCACACCTGCATCAGCTTATGCCCAGTTGATTCCCTCATTGAATGATCTTGTCCACTTGTATCACCTTGATCCGGAGGTTGCATTCTTGATATACCGCCCTGTTATAAGGCTATTTAAGTGTCAGGATCAATCTGATGTCTTCTGGCCTTTGGATGACAAGATTTTAAATATTGTGGACGTGAACTCTGAATCTGAACGGACACAAGACTCTGCTAACGTGTTTTTAGATCTTGGCCCTCCACGAGAACCTATAAAGTGGTCAGATCTTCTAGATACTGTTAAATCGATGTTGCCAACTAAAGCATGGAACAGCCTATCTCCAGATCTCTACGCTACATTTTGGGGGCTGACACTTTATGATCTTTATGTTCCTAGAAGTCGTTATGAATCTGAAGTTTCGAAGCAGCATGCTGCTCTCAAAGCTTTGGAAGAGCTCTCTGATAATTCAAGTTCGGCAATCACAAAAAGAAAAAAAGACAAGGAAAGAATACAAGAATCCCTTGATCGTTTGACTAGTGAGCTCCGTAAGCATGAAGAAAATGTTGCATCAGTACGACGGCGACTTGCTCGTGAGAAGGATAAATGGCTAAGTTCATGTCCCGATACCTTAAAAATTAACATGGAGTTCCTTCAGCGTTGTATTTTTCCTCGTTGCACATTTAGTATGCCTGATGCCGTTTATTGCGCCTTGTTCGTACACACTCTTCATTCTCTCGGAACACCATTCTTTAACACAGTTAATCATATTGATGTTTTGATATGTAAAACCTTGCAACCTATGATCTGTTGCTGTACTGAATATGAGGCAGGCAGACTTGGAAGATTTTTATATGAGACACTCAAGATTGCTTATTTCTGGAAGAGTGATGAATCCATTTATGAGCGAGAGTGTGGAAATATGCCTGGTTTTGCTGTGTATTATCGATATCCGAACAGCCAGAGAGTCACGTATGGCCAATTCATTAAGGTACATTGGAAATGGAGTCAAAGAATCACACGGCTACTGATTCAGTGTTTAGAATCGACTGAGTACATGGAAATTCGAAATGCTCTAATAATGCTGACCAAAATTTCTGGTGTTTTTCCTGTTACTCGAAAGAGTGGGATCAACCTTGAAAAACGGGTAGCCAAGATCAAAAGTGATGAAAGAGAAGATCTGAAGGTGTTGGCAACCGGCGTTGCTGCAGCTTTAGCATCTAGAAAATCTTCATGGGTTACTGATGAAGAATTTGGCATGGGATATCTTGAGCTAAAGGCTGCACCACCCGTTACTTCAAAATCTTCTGCTAACAGTTTAACAGCTATGCAAAATAGTTCTGTTCATAATGTTTCTCAAAGTGAACTTGGTGGGGGGAAAACTGCAGCTGTAGGAAGCCACCATTCAGATTCTGGGAATCTACTGAAAGATCAAAGGTCTAGATCTGGTGATGGGAAATCAGAACGAACAGATGGTGTTGCAAAATCTGACGCAGGGTTTGGAAAAGTAAAGAGTAATTTATTGGTGAATGGTTCTGATTCTCACTTGTCGATGCCTTCTGGGGCAGTACAAGTTGCAACGTCTAGAGTAATTGAAAGTCAAAAGCCAGCTGATGAGTTGAATAGAACAGTAGATGACAACGTTGGAAAAGTGGCTTCAAAGAACTTGATGGAATCTGAGTTGAGGGCTGTGGGAAAACGATCACAGCCTGCTGGTTCACTCAATAAGGCACCAAAACAAGATACTGCGAAAGATGATGGGAGATCTGGTAAAGCTTCTGGAAAAATTTCTGGCTCTTCCACCAGTGATAGGGAGCTTCTTAGTCAAGCATCAGATAGTAGGCAGGGTGGGGCTTCTAATATTCTCCCTTCAATGACAGGAAATGGTAACTCAATCACTGCTTCCGCTAGAGGTTCCTCATCATCTACAAGAGCATATGATATTCACGGTCCCGAACCTAAGGTAGAGGCTGGAGCTACCAAGTCGTTTGATTTAAGGGCTTCTTCAGCTAAGGATGACGGCATTGATGGTCCTGATTTGCCAAGGGTCTCGTCTCGACTTGCTCATTCTCCCCGACATGATAGTTCTTCTACTGCTTCCAAATCTAGTGATAAAGTGCAGAAAAGGTCCAGTCCCGTTGAAGAGCCAGACAGGCAAAGTAAACGTCGAAAAGGAGAGAATGAACCTAAGGAAACCGAAGGTGAAGTTCGGGGTTCTGACTTAGAGAGATTTGTTGATGCTGACAAATTAGGAATTGATGAGCACAGTGCTTATAAAGCTACAGATAAAAACGTGGATAGACCGAAGGACAAGGGAAATGAAAGGTATGATAGAGATTACAGGGATAGGTTGGATCGCTCTGACAAGTCTCGGGGAGATGATACATTAGTGGAAAAAGTACGGGATAGGTCAATGGAAAGATATGGACGAGAGCGCTCAGTTGAGCGACTTCAAGAGAGAGCCTCTGATAGGAACTTTTGA 4911 41.93 MALPPVECAYVTEDSLREWKSGNLSFKVPHPVPMLRFLYELCWTMVRGELPFQVCKAALDTVEFLEKVSVEELGSSLADIVTQMAQDLTMLGEFRLRLIKLAKWLVESTLVPLRIFQERCEEEFLWEAEMIKIRAQDLKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDIEASSQSVSDSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNGVFLELIPIFPKSHASQILGFKFQYYQRMEVSSHVSFGIYKLTALLVREEFINLDSIYAHLLPKDDEAFEHYNAFSSKRLDEANKIGKINLAAIGKDLMEEEKQGDITVNLFAALDMENDAVNERSSELENNQTLGLLTGFLSVGDWYHAYILFGRLSPINPVEHRAICNSLFRLIEESISSAYSIVRKRHSQNLVSSSGASNDAMGLVTSAYPLFIDLPEEFFQMLGVAGPYLFRDAILLQKVCRVLKGYYVSAMELANGGGDFICEPTIGKNKAPRLHLKEARSRIEEALGICLLPSLQLIPANPAVGQEIWEVMSLLPYEVRYRLYGEWEKDDERIPLVLAARQTAKLDTRRILKRLAKENLKQLGRMIAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVARNNKALIKSSNRLRDSLLPKDESKLAIPLLLLIAQHRSVVVISATAPYIKMVSEQFDRCHGTLLQYVDFLTTVVTPASAYAQLIPSLNDLVHLYHLDPEVAFLIYRPVIRLFKCQDQSDVFWPLDDKILNIVDVNSESERTQDSANVFLDLGPPREPIKWSDLLDTVKSMLPTKAWNSLSPDLYATFWGLTLYDLYVPRSRYESEVSKQHAALKALEELSDNSSSAITKRKKDKERIQESLDRLTSELRKHEENVASVRRRLAREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCALFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYFWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISGVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALASRKSSWVTDEEFGMGYLELKAAPPVTSKSSANSLTAMQNSSVHNVSQSELGGGKTAAVGSHHSDSGNLLKDQRSRSGDGKSERTDGVAKSDAGFGKVKSNLLVNGSDSHLSMPSGAVQVATSRVIESQKPADELNRTVDDNVGKVASKNLMESELRAVGKRSQPAGSLNKAPKQDTAKDDGRSGKASGKISGSSTSDRELLSQASDSRQGGASNILPSMTGNGNSITASARGSSSSTRAYDIHGPEPKVEAGATKSFDLRASSAKDDGIDGPDLPRVSSRLAHSPRHDSSSTASKSSDKVQKRSSPVEEPDRQSKRRKGENEPKETEGEVRGSDLERFVDADKLGIDEHSAYKATDKNVDRPKDKGNERYDRDYRDRLDRSDKSRGDDTLVEKVRDRSMERYGRERSVERLQERASDRNF 1636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48278403 48309519 - Bma024237.1 Bma06g01140 84642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1282 1305 - -
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1500 1516 - -
Bma06g01140 1636 Pfam THO complex subunit 2 N-terminus 70 414 IPR032302 -
Bma06g01140 1636 Pfam THO complex subunit 2 N-terminus 442 590 IPR032302 -
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1403 1456 - -
Bma06g01140 1636 Coils Coil 943 963 - -
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1373 1636 - -
Bma06g01140 1636 Pfam Transcription factor/nuclear export subunit protein 2 920 1214 IPR021418 -
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1517 1636 - -
Bma06g01140 1636 PANTHER THO2 PROTEIN 9 1636 IPR040007 GO:0000347|GO:0006397|GO:0006406
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1243 1308 - -
Bma06g01140 1636 Pfam Transcription- and export-related complex subunit 592 667 IPR021726 -
Bma06g01140 1636 PANTHER THO COMPLEX SUBUNIT 2 9 1636 - -
Bma06g01140 1636 Coils Coil 971 1012 - -
Bma06g01140 1636 Coils Coil 332 352 - -
Bma06g01140 1636 MobiDBLite consensus disorder prediction 1243 1269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01140 K12879 THOC2; THO complex subunit 2 - qsu:111987545 2459.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01140 Bma_Chr06 FPKM 2.044499 1.518979 1.899715 1.936397 3.637403 3.96553 3.915941 2.073669 2.145998 2.382098