Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01141 ATGAGGAAACCCCACCTGGGTTTTGGGGGTTTCTTCATTATTTTGACGTCGTTGCTTCTCCTCCTCTCTTCTTCCGTCGACTCCCGGCTTTGTGTCGACGATACCGTAATGTCGGCCCTCAAAAAAAGCATCGTTAACTCGAACTCTCTGGGATGGTCCGACTCCGATTGCTGTAACTGGCCTCGTGTGAAATGTGTCTCTGACAGGGTTTCAGCGATTCAAATCGGAAACCAAAAACTCCGAGGTTCACTGCCTTCTAACCTTAGTAATCTCGCTGCTTTGACGATATTTGAGGTTCAAAACAACGCTCTGACTGGCCCCTTTCCGAACTTAGCCGCAACTTTGCAGAGACTTCTTGCCCACGACAATAACTTCACTTCCTTTCCCATCGATTTCTTTGTTGACAAATCGGAGTTAATAGAGATAGACATAGACGAAAATCCCTTCTCGGCATGGCAAATTCCGGAAAGTATCCTGGACGCTACGTCGTTGGTTGAATTTTCGGCAAATAAAGCTAACCTCACTGGAGGAGTCCCTGCAATTTTCGGTGGCAACTCATTCCCTAGCCTGACCAGTTTGCATTTGTCGATGAATAATCTTGAAGGGGAAATTCCCGATACTTTTGTAGGCTCTGGAATTCAGTCCTTGTGGTTGAATGGACAGCAAGGTACCGTTAAGTTAAATGGTTCAATTTCAGTGCTGCAAAATATGACTAGTTTAGCCGAAGTTTGGTTGCATGGAAATCAATTTTCAGGTCCTTTACCTGACTTTTCTAACTTCAAGGGACTGCAGAATTTGAGTTTAAGAGACAATCAACTTACGGGTATTGTTCCGTCATCTTTGGTGCAATTGAACACCCTTATAATAGTTAATTTGACGAATAATTTGCTTCAAGGGCCTACCCCAAAATTTGATTCTACAGTTCAGTTGGATATGAGATCTGGGTCTAATAATTTCTGCTTGGATACTCCTGGTGAGGCCTGCGACGATCGTGTTAATGCTTTGTTATTGGTAGCGCAAGCAGTAGGTTACCCAACAGCTTTTGCAAAATCTTGGGAGCATAATGACCCTTGTGAGAGTTGGACTGGTATTACATGTGATGCTACGAGAAACATCACAGTTATTAATTTTAATGGCAAGAATCTTAATGGTACAATTTCTCCCAGTTTTGCTTTGCTTACATCCGTGAAAAGTTTGTTTCTCTCTAACAATTCTTTAACTGGGAAAATTCCATCCGAGCTTACAACTATGCCTAATCTTGTTCAATTGGATGTTTCAAATAACAACCTTTATGGTAAAGTGCCATCTTTTTCGAAGAATGTTGTTGTGATAACTGATGGTAATCCTGATATTGGTAAGGATAGAAGTAGTGTCCCATCTTCATCGGCGTCATCGTCGACTGGGGAAGGTAAAAAATCAAAGACTGGATTGATCATCGGGTCTGTTGTTGGTAGTATTGTTGGATTGGTTTTAGTAGGGGCTGGAGTCTTCTTTTTGTTTAGTAAAAGGCAAAAGCAAAGAGGTAGAGTACAGGCTTCAAATGCTGTGGTTATACATCCTCGACATTCAGGGGACCAAACTGGTGTGAAGATCTCTGTTGCTGGCCCTAGGGTTGCCGGTGGGGGAAGCGCCTTCAATAGTCCTTCGAGTCTTGGGTCAGGGCCTAGCAACATTCACGTTGTCGAGGCTGGAAATATGATTATTTCGATTCAAGTTTTGAGGAGTGTGACAAACAATTTTAGCGAAGAAAATATACTTGGAAGAGGTGGTTTTGGCTCTGTTTACAAAGGTGAGCTGCATGATGGTACCCAAATTGCAGTCAAGAGGATGGAGTCTGGAGGTGTGAGTGAGAAGGGTCTTAGCGAGTTTATGGCTGAGATAACGGTTCTTACAAGTGTTCGGCATAGAAATTTGGTGGGACTTCTTGGATATTGCTTGGATGGACATGAGAGACTTCTTGTGTATGAATATATGCCTCAGGGACCTCTTAGTAGGCATCTTTTTAACTGGAAAGATGAAGGATTAAAACCTCTTGAATGGATGAGAAGGCTTATTATTGCTTTGGATGTCGCCAGAGGGGTCGAATACTTGCATAGTTTAGCCCATCAAAGTTTTATTCATCGAGATCTTAAACCATCGAACATTCTTCTTGGGGAAGATATGCGTGCTAAAGTAGCAGACTTTGGGCTAGTACGGCTTGCTCCGGTGGGGAAATCATCTGTTGAAACAAAACTCGCTGGGACATTTGGCTATCTTGCTCCGGAATATGCAGTTACTGGACGGGTAACGACAAAGATCGATGTCTATAGCTTTGGAGTGATTTTAATGGAGCTGATCACTGGTCGAAAAGCACTTGACGAGTCTCAGCCTGAAGATAGCTTGCATTTGGTGTCATGGTTCCAAAGAATGCTGATCAGCGACGAAGGCATCGGCAAGACAGTGGACCAAACAATTGCCATAAATGATGACACCCTCTCTAGCATTGGCAAAGTAACTGAGTTGGCAGGCCACTGCTGTGCGAGGGAGCCATCCCGGCGGCCTGACATGGGGCATGTCGTTAATGTCCTTTCTTCCCTTGTGGAGCAATGGAAGCCTGTAGAGCCTAATCCCGAGCAGGTGATTGGAATCGACTTCAGCATGTCCTTAAAACAGGCCGTTAAGAGGTGGCAGGCCCTCGAAGGACATACACATTTGGATGAATCTACTTCTTCTTCTATCCCTTTTCTTCCTAGTGGGGACGACAATACGATGGGAAGTATTCCGACTCGACCGTCCGGGTTTGCAGACTCGTTTAATTCAACTGATGGACGGTGA 2814 44.1 MRKPHLGFGGFFIILTSLLLLLSSSVDSRLCVDDTVMSALKKSIVNSNSLGWSDSDCCNWPRVKCVSDRVSAIQIGNQKLRGSLPSNLSNLAALTIFEVQNNALTGPFPNLAATLQRLLAHDNNFTSFPIDFFVDKSELIEIDIDENPFSAWQIPESILDATSLVEFSANKANLTGGVPAIFGGNSFPSLTSLHLSMNNLEGEIPDTFVGSGIQSLWLNGQQGTVKLNGSISVLQNMTSLAEVWLHGNQFSGPLPDFSNFKGLQNLSLRDNQLTGIVPSSLVQLNTLIIVNLTNNLLQGPTPKFDSTVQLDMRSGSNNFCLDTPGEACDDRVNALLLVAQAVGYPTAFAKSWEHNDPCESWTGITCDATRNITVINFNGKNLNGTISPSFALLTSVKSLFLSNNSLTGKIPSELTTMPNLVQLDVSNNNLYGKVPSFSKNVVVITDGNPDIGKDRSSVPSSSASSSTGEGKKSKTGLIIGSVVGSIVGLVLVGAGVFFLFSKRQKQRGRVQASNAVVIHPRHSGDQTGVKISVAGPRVAGGGSAFNSPSSLGSGPSNIHVVEAGNMIISIQVLRSVTNNFSEENILGRGGFGSVYKGELHDGTQIAVKRMESGGVSEKGLSEFMAEITVLTSVRHRNLVGLLGYCLDGHERLLVYEYMPQGPLSRHLFNWKDEGLKPLEWMRRLIIALDVARGVEYLHSLAHQSFIHRDLKPSNILLGEDMRAKVADFGLVRLAPVGKSSVETKLAGTFGYLAPEYAVTGRVTTKIDVYSFGVILMELITGRKALDESQPEDSLHLVSWFQRMLISDEGIGKTVDQTIAINDDTLSSIGKVTELAGHCCAREPSRRPDMGHVVNVLSSLVEQWKPVEPNPEQVIGIDFSMSLKQAVKRWQALEGHTHLDESTSSSIPFLPSGDDNTMGSIPTRPSGFADSFNSTDGR 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48311782 48318169 - Bma024238.1 Bma06g01141 84643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01141 937 SUPERFAMILY L domain-like 332 439 - -
Bma06g01141 937 Pfam Leucine rich repeat N-terminal domain 39 65 IPR013210 -
Bma06g01141 937 Pfam Leucine rich repeat N-terminal domain 330 367 IPR013210 -
Bma06g01141 937 CDD STKc_IRAK 586 859 - -
Bma06g01141 937 Pfam Protein kinase domain 581 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01141 937 PANTHER OSJNBA0070M12.3 PROTEIN 19 937 - -
Bma06g01141 937 MobiDBLite consensus disorder prediction 448 473 - -
Bma06g01141 937 Gene3D Phosphorylase Kinase; domain 1 549 657 - -
Bma06g01141 937 SUPERFAMILY L domain-like 28 323 - -
Bma06g01141 937 ProSiteProfiles Protein kinase domain profile. 580 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01141 937 PANTHER RECEPTOR PROTEIN KINASE TMK1 19 937 - -
Bma06g01141 937 SUPERFAMILY Protein kinase-like (PK-like) 556 868 IPR011009 -
Bma06g01141 937 MobiDBLite consensus disorder prediction 454 472 - -
Bma06g01141 937 ProSitePatterns Protein kinases ATP-binding region signature. 586 608 IPR017441 GO:0005524
Bma06g01141 937 Gene3D Ribonuclease Inhibitor 32 327 IPR032675 -
Bma06g01141 937 Gene3D Ribonuclease Inhibitor 329 455 IPR032675 -
Bma06g01141 937 Gene3D Transferase(Phosphotransferase) domain 1 658 873 - -
Bma06g01141 937 SMART serkin_6 580 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01141 937 MobiDBLite consensus disorder prediction 898 937 - -
Bma06g01141 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01141 - - - csv:101210025 1162.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00495 Bma06g01141 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01014 Bma-Chr2:51290606 Bma06g01141 Bma-Chr6:48311782 0 dispersed
Bma04g00984 Bma-Chr4:15847312 Bma06g01141 Bma-Chr6:48311782 0 dispersed
Bma04g01540 Bma-Chr4:51470576 Bma06g01141 Bma-Chr6:48311782 2.89E-83 dispersed
Bma06g01141 Bma-Chr6:48311782 Bma14g00387 Bma-Chr14:4619699 6.73E-12 dispersed
Bma01g00495 Bma-Chr1:4057983 Bma06g01141 Bma-Chr6:48311782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66556 PF00069 Pkinase 5.20E-46 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01141 Bma_Chr06 FPKM 52.14851 58.841553 38.621647 43.154705 57.934139 52.682972 56.191277 83.075722 79.387245 78.45063