Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01143 ATGGAAAGCCACCCAGTTCAGCTTTTTAATTTTCAGCTCGCTTTGGCGATAATCTTTGTTGTGTTTCTATTGATTTCTACGGCGGAACAGCCGGGCGTTGAGTCCGTTGCAACCGATGCAGAAGCCCTTCTGATGCTGAAGAATATGATTGATAAAGACCCAAATGGAGTTCTATCGAGTTGGCAGCTCCACAAGAATCCATGCACTTGGATTGGAGTTTCATGCTCGTCTGGCCGAGTAACTAAGCTCGATCTCAGCGGCTATAATCTCGACGGAATTCTCTCTTTTGATCCGTTTGTTTCTCTAAATATGCTGTCTGTTCTGAAATTGTCGTCAAATTCCTTCATCATAAACTCAACAAATCTGCTTCAGCTTCCAGACAGTTTGCAGCAGCTTGAACTGTCTTTGGTTAGACTCGTCGGCAATGTTCCTCAAAATCTTTTCTCCAAATGTCCTAATCTTGTTTATGTAAACCTTGGATTCAACAATTTGACAGGGCCTTTGCCTGAAAATCTGCTGCTGAATTCTAACAAGCTTCAGGCTCTTGATCTCTCTTACAACAATCTTAGCGGATCCATCTCTGGTTTGAAACTCGAACCTGATTCTTGCGGGGCTTTGTTGCATCTCGATCTTTCTGGAAATCGTTTAACGGGTTCGATCCCGATTGGCATTTCAAACTGCTCAAATCTTCAAAATCTGAGTTTATCGTATAATTTTCTGACAGAGGAGATTCCAGATTCTGTCGGGGAGCTAGACAGCCTGCAAAAGTTGGATCTCTCGCACAATCAGCTCACCGGCTGGATCCCTTCGGAGTGGGGAAACGCCTGCAATTCCCTCACCGAGCTTCGGCTTTCGTATAACAACATTTCGGGTCCGATTCCGTCTTCCTTCATTTCGTGTGATTTGCTCCAAGTTTTCGATCTTTCGAACAACAATATCTCGGGTCCTCTGCCATTTTCAATCTTCAAGAATCTTCTCTCACTAGAGAGCTTGCTTTTGAGTAATAACATTATATCTGGGCCATTTCCTGCATCTATATCATCTTGCAAGAAATTGCAGACTGTAGATTTGAGCTCCAACAAGATTTCAGGCACAATTCCACCCGACATCTGTCCTGGTGCAGGGTCGCTCGAGGATCTGAGAATGCCGGATAATCTCATCAGAGGGGGCATCCCATCTCAATTGGCTCTTTGCAAACAGCTTAAGACTATTGATTTCAGCCTTAACTATCTAAATGGATCAATTCCTCCAGAGCTAGGGGAGCTTGCGAATCTCGAACAGTTTGTCGCTTGGTTCAACAGCTTGGAAGGGAAAGTCCCACCAGAGTTGGGAAAATGCAAGAGCCTGAAGGATCTCATTATCAACAACAACCGCCTCACCGGAGAAATTCCGGCTGAATTGTTCAATTGCTCTAATCTTGAATGGATTTCGCTCACAAGCAATGAGCTGACAGGCGAAGTGCCGAAGGAATTCGGGCTTCTGACGAGGCTGGCCGTTCTGCAGCTTGGGAATAATAGCTTAAGTGGGCAAATCCCAGGTGAGCTAGAGAATTGCAGCACTTTGGTTTGGCTGGACTTGAACAGCAATAAGCTTACCGGAGAGATTCCTCCTCGACTTGGAAGGCAGCCTGGAGCGAAATCGTTGAGCGGAATTCTCTCTGGAAACACTCTAGTTTTCGTTCGAAACGTGGGAAATTCATGTAAAGGAGTGGGAGGATTGCTAGAGTTTGCAGGGATTCGACCGGAAAGATTGTTGCAGGTCCCTACATTGAAGAGTTGCGATTTCACAAGACTCTATTCTGGTACAGTTCTTAGCCTCTTCACAAAATATCAAACTCTGGAGTATCTGGATCTTTCTTACAACGAGCTCCGAGGAAGAATTCCAGCAGAATTCGGGGACATGGTGGCCATGCAAGTTCTGGAATTATCCCACAATCAACTTTCCGGTGAGATCCCGGAATCACTCGGCCGCCTTAAAAACTTAGGCGTCTTTGATGCCTCTTATAACAGGTTTCAAGGTCATATTCCTGATTCTTTCTCTAATCTATCGTTCTTGGTCCAAATTGACTTGTCAAACAACGAATTAACCGGTCAAATTCCGTCAAGAGGCCAGCTAAGTACACTTCCAGCGAGTCAGTATGCGAATAATCCAGGTCTCTGTGGGGTTCCCTTGCCTGAATGTGAAAATGAAGACCAACCATCCACGAACCCGAGCGAGGCGACATGGAAGGGAAGACGAAAGGCCGAAACTGCGTCTTGGGCGAATAGCATTGTAATGGGCGTACTCATTTCCGTCGCCTGCATTTGCATTTTGATAGTATGGGCAATCGCCATGCGAGCAAGACGGAAAGAGGTAGAGGAGGCCAAAATGCTTACGAGCTTGCAAGCGTCACACGCAGCCACTACATGGCAAATTGACAAAGAGAAAGAGCCCCTTAGCATTAACGTAGCCACTTTCCAGAGGCAGCTTAGGAAGCTCAAATTCTCCCAATTGATCGAGGCCACCAATGGGTTTTCAGCGGCCAGCCTCATCGGCAGCGGCGGATTCGGAGAAGTTTTCAAGGCGACATTGAAAGACGGGTCTAGCGTCGCCATCAAGAAGCTGATACGACTGAGCTGTCAAGGCGACCGGGAATTCATGGCCGAAATGGAAACTTTGGGAAAAATCAAGCATCGGAATCTCGTTCCTCTTCTGGGTTACTGCAAGGTCGGCCAAGAGCGGCTTCTGGTGTATGAATTCATGGAGTTTGGAAGCCTTGAAGAGATGCTGCACGGCCGTGCGAGAACACAAGAACAACGGATTCTGACATGGGAGGAGAGGAAAAAGATTGGAAGAGGAGCAGCGAAAGGGCTCTGCTTCCTTCACCATAATTGCATCCCACACATTATACACAGAGACATGAAGTCCAGCAACGTACTTTTGGACCATGAAATGGATGCTAGAGTGTCCGATTTCGGCATGGCTAGGCTCATAAGCGCACTCGACACTCATCTGAGCGTAAGCACCCTCGCCGGAACCCCCGGCTATGTCCCACCGGAGTACTACCAGAGTTTCAGGTGCACGGCTAAAGGCGACGTCTATTCATTCGGCGTCGTCCTCTTGGAGCTCCTGACGGGGAAGCGGCCGACAGACAAGGAGGATTTCGGAGACACAAATCTGGTGGGGTGGGTGAAAATGAAGGTGAAAGAAGGAAAGCAAATGGAGGTCATAGACCCAGAATTGCTCTCCGTCAGCAAAGGAACGGCCGAAGCGGAGGCCGAAGAGGTCAAGGAAATGGTGCGTTACTTGGAGATAACTCTGCGGTGTGTTGAAGAATTGCCGTCCAGGCGACCAAATATGTTGCAGGTGGTGAGTATGCTGCGCGAGCTGATGCCGGGCTCGGCCAACGGAAGCAGCAACAGCGCTTGA 3408 47.77 MESHPVQLFNFQLALAIIFVVFLLISTAEQPGVESVATDAEALLMLKNMIDKDPNGVLSSWQLHKNPCTWIGVSCSSGRVTKLDLSGYNLDGILSFDPFVSLNMLSVLKLSSNSFIINSTNLLQLPDSLQQLELSLVRLVGNVPQNLFSKCPNLVYVNLGFNNLTGPLPENLLLNSNKLQALDLSYNNLSGSISGLKLEPDSCGALLHLDLSGNRLTGSIPIGISNCSNLQNLSLSYNFLTEEIPDSVGELDSLQKLDLSHNQLTGWIPSEWGNACNSLTELRLSYNNISGPIPSSFISCDLLQVFDLSNNNISGPLPFSIFKNLLSLESLLLSNNIISGPFPASISSCKKLQTVDLSSNKISGTIPPDICPGAGSLEDLRMPDNLIRGGIPSQLALCKQLKTIDFSLNYLNGSIPPELGELANLEQFVAWFNSLEGKVPPELGKCKSLKDLIINNNRLTGEIPAELFNCSNLEWISLTSNELTGEVPKEFGLLTRLAVLQLGNNSLSGQIPGELENCSTLVWLDLNSNKLTGEIPPRLGRQPGAKSLSGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLLQVPTLKSCDFTRLYSGTVLSLFTKYQTLEYLDLSYNELRGRIPAEFGDMVAMQVLELSHNQLSGEIPESLGRLKNLGVFDASYNRFQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPECENEDQPSTNPSEATWKGRRKAETASWANSIVMGVLISVACICILIVWAIAMRARRKEVEEAKMLTSLQASHAATTWQIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGQERLLVYEFMEFGSLEEMLHGRARTQEQRILTWEERKKIGRGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMDARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVKEGKQMEVIDPELLSVSKGTAEAEAEEVKEMVRYLEITLRCVEELPSRRPNMLQVVSMLRELMPGSANGSSNSA 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48354489 48357896 + Bma024242.1 Bma06g01143 84645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01143 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 26 1124 - -
Bma06g01143 1135 PRINTS Leucine-rich repeat signature 179 192 - -
Bma06g01143 1135 PRINTS Leucine-rich repeat signature 251 264 - -
Bma06g01143 1135 SUPERFAMILY L domain-like 580 723 - -
Bma06g01143 1135 Gene3D Phosphorylase Kinase; domain 1 797 913 - -
Bma06g01143 1135 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Bma06g01143 1135 ProSitePatterns Protein kinases ATP-binding region signature. 844 867 IPR017441 GO:0005524
Bma06g01143 1135 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
Bma06g01143 1135 SUPERFAMILY L domain-like 61 318 - -
Bma06g01143 1135 SUPERFAMILY RNI-like 244 555 - -
Bma06g01143 1135 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 1124 - -
Bma06g01143 1135 Pfam Leucine Rich repeat 348 364 IPR001611 GO:0005515
Bma06g01143 1135 Pfam Leucine Rich repeat 176 191 IPR001611 GO:0005515
Bma06g01143 1135 Pfam Leucine Rich repeat 276 291 IPR001611 GO:0005515
Bma06g01143 1135 SMART serkin_6 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01143 1135 ProSiteProfiles Protein kinase domain profile. 838 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01143 1135 Pfam Brassinosteroid receptor island domain 549 607 IPR045381 -
Bma06g01143 1135 Pfam Protein kinase domain 841 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01143 1135 Pfam Leucine rich repeat 208 264 IPR001611 GO:0005515
Bma06g01143 1135 Pfam Leucine rich repeat 606 647 IPR001611 GO:0005515
Bma06g01143 1135 Pfam Leucine rich repeat 448 507 IPR001611 GO:0005515
Bma06g01143 1135 Gene3D Transferase(Phosphotransferase) domain 1 914 1132 - -
Bma06g01143 1135 SMART LRR_typ_2 446 470 IPR003591 -
Bma06g01143 1135 SMART LRR_typ_2 251 274 IPR003591 -
Bma06g01143 1135 SMART LRR_typ_2 203 227 IPR003591 -
Bma06g01143 1135 SMART LRR_typ_2 349 373 IPR003591 -
Bma06g01143 1135 SMART LRR_typ_2 634 658 IPR003591 -
Bma06g01143 1135 SMART LRR_typ_2 494 518 IPR003591 -
Bma06g01143 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1120 IPR011009 -
Bma06g01143 1135 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Bma06g01143 1135 Gene3D - 552 608 - -
Bma06g01143 1135 Gene3D Ribonuclease Inhibitor 172 727 IPR032675 -
Bma06g01143 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01143 Bma-Chr6:48354489 Bma09g00422 Bma-Chr9:35344749 0 dispersed
Bma07g01340 Bma-Chr7:48930728 Bma06g01143 Bma-Chr6:48354489 8.01E-54 dispersed
Bma14g01466 Bma-Chr14:28687846 Bma06g01143 Bma-Chr6:48354489 1.71E-128 dispersed
Bma15g00434 Bma-Chr15:4712114 Bma06g01143 Bma-Chr6:48354489 4.38E-22 dispersed
Bma06g01143 Bma-Chr6:48354489 Bma09g00155 Bma-Chr9:5397708 6.37E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66557 PF00069 Pkinase 1.50E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01143 - - csv:101208987 1837.77