Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma06g01154 | ATGCTGGATGCAGTATTGAGCAGTCGAGCCTTCGACTACTTGATATCGCACTCGGTTTCCTGTGACTCTCTTTTAGTGGCGGCCGAAAGTGACGACAACTTACAAAACAAGCTTTCTGATCTGGTGGACCGCCCTAATGCGTCCAATTTCAGCTGGAACTACGCCATTTTCTGGCAGATTTCGAAGTCGAAATCCGGCGAGTGGGTTTTGGGATGGGGAGATGGGTGCTGCCGAGAGCCGAGAGAAAATGAAGATGCAGAAGCGTCGAGAATTCTCAGTTTCCGGGTAGACGATAAAACGCAGCAGGACATGAGGAAAAGAGTCCTGCAGAAACTCCATACCTTGTTCGGGGGATCCGATGAAGATAATTACGCCTTTGGATTAGACAGAGTGACTGATACAGAGATCTTCTTCCTCGCCTCTATGTACTTCTCTTTTCCTCGAGGAGAAGGTGGGCCTGGTAAGTGCTTAGCTTCTGCCAAACACGTCTGGCTCGTCAATTTGCTGCAATCTCAATACGATTACTGCGTTCGATCCTTTTTAGCTAAATCGGCTGGAATTAGAACTGTTGTTTTAGTGCCCACTGATGTTGGAGTGGTTGAAATTGGTTCTGTGAGATCTGTTTCCGAGAGCTTAGATTTGGTGAATTCTATCAGATCCTTATTTTCCTCTCAGCCGTGTTTTAGCAGGCTGGAGCAGCCATTGGCCACGGATGAGAAGAAAGGCGAGAGTACCCATTTTAGAGAAGGGAATTCTAAGGTTTTTGGGCAAGATTTTAGTTCTGTGAAAATGGGTCGATCCAATTTCAGAGAGAAGCTTGCTATTAGAAAGATGGAGGATAGATCTTGGGAAGGTAATGCAAATGGAGGAAGAATTGCATTTCAGAGCCACCCTCAAAATGGAATGCATAGTTCCGGTTGGGGCATTCATGGCCTCAAACATGGCAGCTCTGCAGAAGTCGTTCCCCCAAGATTAAACCAGGTTCAGCAAAAACTGATTAATGGCGTAAGAGAAGATTTCCGGTTAGGCAATTATCAACAGCAAATGCAGATTGATTTTTCAGGGGCAACTTCACGGCCTTCTGTGATTTCAAGGCTTAATGCAGAATCGGAGCATTCGGATGCAGAAGCTTCCTGCAAAGAAGAGACACCGATAAGCACAGCAGACGGAAAGAGGCCAAGAAAACGAGGGAGGAAACCTGCAAACGGGCGAGAAGAGCCCCTCAATCACGTTGAAGCAGAGAGACAGCGAAGGGAGAAGCTAAACCAGCGATTCTACGCCTTACGAGCAGTCGTCCCAAACATCTCCAAAATGGACAAAGCCTCTTTGTTGGGAGACGCCATTGCTTACATAAACGAGCTGCAAGCAAAGCTCAAAGCCATGGAAGTAGAGAGGGAAGAGAAATTCAGCAACAATTCGAGGGTAAATCCAGAAAATCAAAATCAGGTGGAAATGGAAGCTGTGAACGATGAGATAATTGTAAGACTGGAGTGCCCTTTGGAGTCACACCCTGCATATAAAGTAATTCAAGCAATTAAAGACGCTCAGTTAACTGTTGTAGACTCAAAACTCTCAGCAGCAGGAGGTACAGTTTACCATAGCTTTGTGATAAAACCTCAAGGATCTGAGCTGCTAACGAAGGAAAAGTTAATGGCTGCAATTTCCCAGGAATCCAACTTGATACCACCATTGTCGCCGTCAACTGGATAG | 1710 | 45.96 | MLDAVLSSRAFDYLISHSVSCDSLLVAAESDDNLQNKLSDLVDRPNASNFSWNYAIFWQISKSKSGEWVLGWGDGCCREPRENEDAEASRILSFRVDDKTQQDMRKRVLQKLHTLFGGSDEDNYAFGLDRVTDTEIFFLASMYFSFPRGEGGPGKCLASAKHVWLVNLLQSQYDYCVRSFLAKSAGIRTVVLVPTDVGVVEIGSVRSVSESLDLVNSIRSLFSSQPCFSRLEQPLATDEKKGESTHFREGNSKVFGQDFSSVKMGRSNFREKLAIRKMEDRSWEGNANGGRIAFQSHPQNGMHSSGWGIHGLKHGSSAEVVPPRLNQVQQKLINGVREDFRLGNYQQQMQIDFSGATSRPSVISRLNAESEHSDAEASCKEETPISTADGKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMEVEREEKFSNNSRVNPENQNQVEMEAVNDEIIVRLECPLESHPAYKVIQAIKDAQLTVVDSKLSAAGGTVYHSFVIKPQGSELLTKEKLMAAISQESNLIPPLSPSTG | 569 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 48458751 | 48460460 | + | Bma024255.1 | Bma06g01154 | 84656 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma06g01154 | 569 | Coils | Coil | 451 | 471 | - | - | |
| Bma06g01154 | 569 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 34 | 222 | IPR025610 | - | |
| Bma06g01154 | 569 | CDD | bHLH_AtAIB_like | 402 | 467 | - | - | |
| Bma06g01154 | 569 | MobiDBLite | consensus disorder prediction | 286 | 315 | - | - | |
| Bma06g01154 | 569 | PANTHER | MYC | 3 | 562 | IPR045084 | GO:0003700|GO:0006355 | |
| Bma06g01154 | 569 | PANTHER | TRANSCRIPTION FACTOR MTB1 | 3 | 562 | - | - | |
| Bma06g01154 | 569 | MobiDBLite | consensus disorder prediction | 399 | 416 | - | - | |
| Bma06g01154 | 569 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 408 | 469 | IPR036638 | GO:0046983 | |
| Bma06g01154 | 569 | SMART | finulus | 411 | 460 | IPR011598 | GO:0046983 | |
| Bma06g01154 | 569 | Gene3D | - | 399 | 471 | IPR036638 | GO:0046983 | |
| Bma06g01154 | 569 | MobiDBLite | consensus disorder prediction | 366 | 416 | - | - | |
| Bma06g01154 | 569 | Pfam | Helix-loop-helix DNA-binding domain | 409 | 455 | IPR011598 | GO:0046983 | |
| Bma06g01154 | 569 | MobiDBLite | consensus disorder prediction | 369 | 391 | - | - | |
| Bma06g01154 | 569 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 405 | 454 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma02g01104 | Bma06g01154 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma06g01154 | Bma-Chr6:48458751 | Bma10g00396 | Bma-Chr10:4119321 | 3.12E-07 | dispersed | |
| Bma14g01780 | Bma-Chr14:38342757 | Bma06g01154 | Bma-Chr6:48458751 | 4.54E-07 | dispersed | |
| Bma14g01995 | Bma-Chr14:43258483 | Bma06g01154 | Bma-Chr6:48458751 | 1.29E-10 | dispersed | |
| Bma10g00424 | Bma-Chr10:4463780 | Bma06g01154 | Bma-Chr6:48458751 | 7.10E-75 | transposed | |
| Bma02g01104 | Bma-Chr2:52722018 | Bma06g01154 | Bma-Chr6:48458751 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 57511 | PF14215 | bHLH-MYC_N | 1.50E-54 | CL0161 | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma06g01154 | - | - | qsu:111989355 | 739.184 |