Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01156 ATGGAATTTGATCGGATTGAAAGCTTGCCATCGTCGGATGTGATGGACGAGGGGGAGATCCATCAACATCGTCGTCAGTTTTCTTCCAATTCCAAGCCTCAAACCGTCAACAGCCCTCATTTTCACCTTACCACCACAAATGTTCACGAGCTTCTTGAGTGCCCCGTCTGTACGAATTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCATACTCTTTGTTCAACCTGTAAAACAAGGGTGCACAATCGATGCCCGACGTGTAGACAAGAGCTGGGAGACATAAGGTGTTTGGCATTGGAAAAAGTAGCCGAATCGCTTGAATTGCCTTGCAAATACTGTTCGTTGGGATGCCCGGAGATATTTCCCTACTACAACAAGCTTAAACATGAATCTGTGTGTAATTTTAGACCATACAATTGTCCTTACGCTGGTTCTGACTGTGCTGTCGTTGGAGATATTCCCTTCCTTGTTTCTCATCTCAGAGACGATCACAAGGTCGACATGCATTCGGGATGCACTTTCAACCATCGCTATGTCAAGTCCAATCCTCGAGAAGTAGAAAACGCGACATGGATGTTAACTGTATTCCACTGCTTTGGTCAGTACTTTTGTCTCCATTTTGAAGCATTCCAACTGGGTATGGCTCCTGCTTATATGGCTTTTCTTCGATTCATGGGCAGCGAAGCAGAAGCCAGAAACTACAGCTATAGCCTGGAAGTTGGGGGAAGTGGAAGAAAACTCATTTGGGAGGGGAGCCCCAGAAGCATTAGGGACAGTCACGAGAAGGTTAGGGACAGCCACGACGGCCTGATTATTCAGCGTAACATAGCGCTTTTCTTCTCCGGCGGGGAGCGGAAAGAGCTGAAGCTCCGAGTGACCGGCCGGATATGGAAAGAACAGCCCAACTCTGGTGGACCCTGCATACCTATCCTATTTAGCCAAGAATGA 954 47.48 MEFDRIESLPSSDVMDEGEIHQHRRQFSSNSKPQTVNSPHFHLTTTNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYNKLKHESVCNFRPYNCPYAGSDCAVVGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGSEAEARNYSYSLEVGGSGRKLIWEGSPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGERKELKLRVTGRIWKEQPNSGGPCIPILFSQE 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48463528 48466373 + Bma024257.1 Bma06g01156 84658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01156 317 MobiDBLite consensus disorder prediction 1 40 - -
Bma06g01156 317 CDD RING-HC_SIAHs 52 90 - -
Bma06g01156 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 306 - -
Bma06g01156 317 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Bma06g01156 317 Pfam Seven in absentia protein family 96 295 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bma06g01156 317 CDD Sina 168 296 - -
Bma06g01156 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 96 IPR013083 -
Bma06g01156 317 MobiDBLite consensus disorder prediction 1 26 - -
Bma06g01156 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 160 IPR013083 -
Bma06g01156 317 SUPERFAMILY TRAF domain-like 107 299 - -
Bma06g01156 317 SUPERFAMILY RING/U-box 38 93 - -
Bma06g01156 317 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 295 IPR008974 GO:0005515
Bma06g01156 317 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 306 - -
Bma06g01156 317 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01156 Bma-Chr6:48463528 Bma10g01302 Bma-Chr10:46420593 1.52E-168 dispersed
Bma03g00429 Bma-Chr3:3263017 Bma06g01156 Bma-Chr6:48463528 7.70E-117 transposed
Bma10g00166 Bma-Chr10:1436823 Bma06g01156 Bma-Chr6:48463528 2.28E-157 transposed
Bma02g01102 Bma-Chr2:52688346 Bma06g01156 Bma-Chr6:48463528 9.26E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01156 K04506 - pvy:116121280 574.704