Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma06g01156 | ATGGAATTTGATCGGATTGAAAGCTTGCCATCGTCGGATGTGATGGACGAGGGGGAGATCCATCAACATCGTCGTCAGTTTTCTTCCAATTCCAAGCCTCAAACCGTCAACAGCCCTCATTTTCACCTTACCACCACAAATGTTCACGAGCTTCTTGAGTGCCCCGTCTGTACGAATTCTATGTACCCTCCAATTCATCAGTGCCACAATGGGCATACTCTTTGTTCAACCTGTAAAACAAGGGTGCACAATCGATGCCCGACGTGTAGACAAGAGCTGGGAGACATAAGGTGTTTGGCATTGGAAAAAGTAGCCGAATCGCTTGAATTGCCTTGCAAATACTGTTCGTTGGGATGCCCGGAGATATTTCCCTACTACAACAAGCTTAAACATGAATCTGTGTGTAATTTTAGACCATACAATTGTCCTTACGCTGGTTCTGACTGTGCTGTCGTTGGAGATATTCCCTTCCTTGTTTCTCATCTCAGAGACGATCACAAGGTCGACATGCATTCGGGATGCACTTTCAACCATCGCTATGTCAAGTCCAATCCTCGAGAAGTAGAAAACGCGACATGGATGTTAACTGTATTCCACTGCTTTGGTCAGTACTTTTGTCTCCATTTTGAAGCATTCCAACTGGGTATGGCTCCTGCTTATATGGCTTTTCTTCGATTCATGGGCAGCGAAGCAGAAGCCAGAAACTACAGCTATAGCCTGGAAGTTGGGGGAAGTGGAAGAAAACTCATTTGGGAGGGGAGCCCCAGAAGCATTAGGGACAGTCACGAGAAGGTTAGGGACAGCCACGACGGCCTGATTATTCAGCGTAACATAGCGCTTTTCTTCTCCGGCGGGGAGCGGAAAGAGCTGAAGCTCCGAGTGACCGGCCGGATATGGAAAGAACAGCCCAACTCTGGTGGACCCTGCATACCTATCCTATTTAGCCAAGAATGA | 954 | 47.48 | MEFDRIESLPSSDVMDEGEIHQHRRQFSSNSKPQTVNSPHFHLTTTNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYNKLKHESVCNFRPYNCPYAGSDCAVVGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPAYMAFLRFMGSEAEARNYSYSLEVGGSGRKLIWEGSPRSIRDSHEKVRDSHDGLIIQRNIALFFSGGERKELKLRVTGRIWKEQPNSGGPCIPILFSQE | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 48463528 | 48466373 | + | Bma024257.1 | Bma06g01156 | 84658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma06g01156 | 317 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Bma06g01156 | 317 | CDD | RING-HC_SIAHs | 52 | 90 | - | - | |
Bma06g01156 | 317 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 306 | - | - | |
Bma06g01156 | 317 | ProSiteProfiles | Zinc finger RING-type profile. | 54 | 90 | IPR001841 | - | |
Bma06g01156 | 317 | Pfam | Seven in absentia protein family | 96 | 295 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Bma06g01156 | 317 | CDD | Sina | 168 | 296 | - | - | |
Bma06g01156 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 96 | IPR013083 | - | |
Bma06g01156 | 317 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Bma06g01156 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 160 | IPR013083 | - | |
Bma06g01156 | 317 | SUPERFAMILY | TRAF domain-like | 107 | 299 | - | - | |
Bma06g01156 | 317 | SUPERFAMILY | RING/U-box | 38 | 93 | - | - | |
Bma06g01156 | 317 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 295 | IPR008974 | GO:0005515 | |
Bma06g01156 | 317 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 306 | - | - | |
Bma06g01156 | 317 | ProSiteProfiles | Zinc finger SIAH-type profile. | 107 | 167 | IPR013010 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g01156 | Bma-Chr6:48463528 | Bma10g01302 | Bma-Chr10:46420593 | 1.52E-168 | dispersed | |
Bma03g00429 | Bma-Chr3:3263017 | Bma06g01156 | Bma-Chr6:48463528 | 7.70E-117 | transposed | |
Bma10g00166 | Bma-Chr10:1436823 | Bma06g01156 | Bma-Chr6:48463528 | 2.28E-157 | transposed | |
Bma02g01102 | Bma-Chr2:52688346 | Bma06g01156 | Bma-Chr6:48463528 | 9.26E-170 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma06g01156 | K04506 | - | pvy:116121280 | 574.704 |