Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01183 ATGGAAGACGATTGGGATCTTCACGCCGTCGTCAGAGGCTGTAACGCCACAGCCACAACGGCCATTTCTTCTCTTGCTTCTTTCTCTGCTTCCACTTCCATTGCTGCGTTGACTTCTCAAGCTTTTGCATCAGATTCTCCCGGCTCTGGCTTCTCCACTTTCGGTAGAGGGGAAACTGGTCAGTTTTTCTCCGTTCAAGATCCGTTTGAAGGAAGAAACAACGACGAGGAGTTGCATGAGCTTTACAAGCCTTTCTTCCCCAAATCTCCGGTGACGGAGCAGCCTCGGCCGATTTATTGTCCGGCGACGGCGGTCTCTCAGTTTTCTTTTCCGACGGCGTCGAAAGCTCAAGTCCACCAAAAGCAGAGCCATGGAGGATCTGCAACCGCCCCTCGGACCAAACGAAGAAAGAACCAAATGAAGAACGTTTGTCAAGTAGCAGCAGAGAGTCTTTCTTCAGATATATGGGCATGGCGGAAATATGGGCAAAAACCCATAAAAGGCTCTCCATATCCAAGGGGGTATTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCCCGGAAACAAGTGGAGCGGAACAGATCCGACCCGGGAATGTTCATCGTCACCTATACGGCCGAACATAACCACCCTGCTCCGACGCACCGGAACTCACTCGCCGGTTCTACGCGTCAAAAGACATCGACCGCCGCATCCGTATCATCATCTGACCAGAAGAAAAGCGAATCCGAACTACCCGATTTCTCCTCCTCACCATCGTTGGAAGACGGCGGTGCACCCCGGAGTACTACGGCGGAAAGCAAGGAAGAGAAGAAGGATTTGGCTGGAGACGAAGAAGACGAATTTGGGGTGTCGAAGATGGTCTTGAACGACGATTTCTTTGTGGGGTTTGAGGAGCTTGACAGTCCGCCTACCGGAGACAGCTTTTACGACAACTTCCCGGCCAACCTTAATGTTTCTTGGATGGTCACATAG 975 51.59 MEDDWDLHAVVRGCNATATTAISSLASFSASTSIAALTSQAFASDSPGSGFSTFGRGETGQFFSVQDPFEGRNNDEELHELYKPFFPKSPVTEQPRPIYCPATAVSQFSFPTASKAQVHQKQSHGGSATAPRTKRRKNQMKNVCQVAAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKTSTAASVSSSDQKKSESELPDFSSSPSLEDGGAPRSTTAESKEEKKDLAGDEEDEFGVSKMVLNDDFFVGFEELDSPPTGDSFYDNFPANLNVSWMVT 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48898016 48899200 - Bma024292.1 Bma06g01183 84685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01183 324 MobiDBLite consensus disorder prediction 210 260 - -
Bma06g01183 324 SMART WRKY_cls 152 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01183 324 ProSiteProfiles WRKY domain profile. 147 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01183 324 MobiDBLite consensus disorder prediction 207 283 - -
Bma06g01183 324 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 317 - -
Bma06g01183 324 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 317 IPR044810 GO:0003700
Bma06g01183 324 MobiDBLite consensus disorder prediction 262 283 - -
Bma06g01183 324 Gene3D WRKY domain 136 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01183 324 SUPERFAMILY WRKY DNA-binding domain 149 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01183 324 MobiDBLite consensus disorder prediction 113 139 - -
Bma06g01183 324 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01183 324 MobiDBLite consensus disorder prediction 113 129 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00895 Bma06g01183 CCT
Bma04g00895 Bma06g01183 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00895 Bma-Chr4:11869179 Bma06g01183 Bma-Chr6:48898016 3.12E-98 dispersed
Bma06g01183 Bma-Chr6:48898016 Bma14g00891 Bma-Chr14:10081084 2.55E-41 dispersed
Bma05g00832 Bma-Chr5:45698139 Bma06g01183 Bma-Chr6:48898016 9.64E-53 transposed
Bma02g01066 Bma-Chr2:52363739 Bma06g01183 Bma-Chr6:48898016 2.23E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57513 PF03106 WRKY 6.80E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01183 K13425 - jre:108998106 345.51