Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01189 ATGGATCGGAGGGACCTTTCAGGGATGTCCGGCTCGCAAACATTTTATATGCAGAGGGGAATGACTAGTGCCGGGTCTAATCCTCATCCTGGATTGCAAGGGCCACCTCAAGTTCTTCGGTCGATAACCAGTCAAACCGCTCATATGCATTCCAATGTCGGAGGAAACACAATTGGGTCGGCATTACAGGTCGAACCGTCCCAACCGATGACAGCTCACGGGGTCAACTTAGGTGCACAATCAGTAATGCCATCGACCGAGCCGATGAAGAGGCGGAGAGGGAGACCTCGAAAGTATGGTTCGGATGGGACCGTCTCGTTGGCTCTGTCCCCTTCGGCATCAGCCAATCCGGGAATGGTATCGCCTCTCATGAAGCGGGGAAGAGGCCGACCTCCCGGGACTGGAAGGAAACAACAATTAGCTTCTCTTGGTGAATGGCTTTCTGGTTCAGCTGGGATGGGTTTCACTCCCCATATTATCTCCATTGGAGTAGGAGAAGACATTGCTGCAAAGATTATGTCGTTTTCGCAGCAGGGGCCGAGAGCGATATGTATTTTATCGGGCAATGGTGCTGTTTCCACCGTGACTCTTCGTCAGCCTTCGACTTCCGGTGGCACAGTTACTTACGAGGGACGATTTGAGATTGTCTGTCTGTCGGGGTCGTACATACTCAACGACGCCATGGGATCTCGCAACCGGAACGGTGGTTTAAGCGTCTCCCTTGCCAGTCCTGATGGTCATGTGATTGGCGGCAGGATTGGAGGAGTTCTTATCGCTGCAAGCCCCGTCCAGGTAATTTTGGGAAGCTTCGTGTGGGGTGAATCGAGAACTAAGAACAAAAGGAGGGAAGCTTCTGAAGGCGTGATAGACTCCGACCAGCAGTCGTCAGAGAATGCTGCTGGGTTGAACACTGCCGGTCTCGGCCTGGCTTCCTCCCCGATCGGAGTTTGGCCATCTCCACAGACGGTGGATATGCGAAACGCCCACATCGACATCGACTTGATGAGAGGATAA 1014 53.16 MDRRDLSGMSGSQTFYMQRGMTSAGSNPHPGLQGPPQVLRSITSQTAHMHSNVGGNTIGSALQVEPSQPMTAHGVNLGAQSVMPSTEPMKRRRGRPRKYGSDGTVSLALSPSASANPGMVSPLMKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIISIGVGEDIAAKIMSFSQQGPRAICILSGNGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYILNDAMGSRNRNGGLSVSLASPDGHVIGGRIGGVLIAASPVQVILGSFVWGESRTKNKRREASEGVIDSDQQSSENAAGLNTAGLGLASSPIGVWPSPQTVDMRNAHIDIDLMRG 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 48961601 48963301 - Bma024299.1 Bma06g01189 84691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01189 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 271 IPR005175 -
Bma06g01189 337 MobiDBLite consensus disorder prediction 19 38 - -
Bma06g01189 337 CDD DUF296 156 270 IPR005175 -
Bma06g01189 337 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Bma06g01189 337 SMART AT_hook_2 90 102 IPR017956 GO:0003677
Bma06g01189 337 Gene3D - 157 291 - -
Bma06g01189 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 296 IPR039605 GO:0003680
Bma06g01189 337 MobiDBLite consensus disorder prediction 82 137 - -
Bma06g01189 337 ProSiteProfiles PPC domain profile profile. 151 292 IPR005175 -
Bma06g01189 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 296 - -
Bma06g01189 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01969 Bma-Chr1:73398310 Bma06g01189 Bma-Chr6:48961601 2.27E-61 dispersed
Bma05g00817 Bma-Chr5:45468933 Bma06g01189 Bma-Chr6:48961601 2.93E-92 dispersed
Bma06g01189 Bma-Chr6:48961601 Bma14g00567 Bma-Chr14:6073947 6.02E-70 dispersed
Bma12g00084 Bma-Chr12:1552325 Bma06g01189 Bma-Chr6:48961601 2.02E-07 dispersed
Bma12g00375 Bma-Chr12:7214816 Bma06g01189 Bma-Chr6:48961601 6.30E-10 dispersed
Bma13g00430 Bma-Chr13:7990869 Bma06g01189 Bma-Chr6:48961601 4.96E-49 dispersed
Bma09g00198 Bma-Chr9:8043734 Bma06g01189 Bma-Chr6:48961601 3.93E-49 transposed
Bma02g01062 Bma-Chr2:52212006 Bma06g01189 Bma-Chr6:48961601 2.00E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01189 - - jre:109019059 437.958