Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01199 ATGGCTGGAATTAGGTTATCTATGTTGAAGAGGCGACTGTGTGATTGGAAGCCACTTTCCTTTCAATGTTTCGATTATATTGAATGTGGAAATTATGCTCATAGTCTTCGTGTAACAGTCAGATCATCGTTTGCTCTTCTAAATCACAAGTATTACTCAATTCTGAAATCTGAAAATGTTGCCACTACCCATTCCGGAGCAGCATGTATAGAACCTCTGGCTGCCAAAAACTATTATAAAACCAAACCCTTGACTGCATTTTCACTCATGTATTCAAATTCTCAATTACGAAATACTGTTCTTCTTTCTATGTCAAACCCACTATATAATTATCGATCATATTCATCATCATCTGGTAATAAAGTGGGGGACTACAGAGACGTGGGAGTTAAGGCAGCGTCTGGCACTGATGAAGGGGATGTTAATACCACGAGCATTCTTGGAGGTGATTGGCATGAAAAAGTTAAGGATGCTTATCAAAGTGCTGTAGAGGCTGTATCATTTTCTGGGCAGAGGGCAAAAGCAGTATCTGATGAATGGACACCTTATATTGATCAATTGTTTGATGCACATCCATATCTCAAAAATGTGATTGTTCCGGTGAGTTCTACATTGACTGCCTCTGTTTTGGCGTGGGTGGTGATGCCTAAGGTGTTGAGAAGATTTCATAAGTATGCAACATCAGGTCCGGCTGCTCTTCTCTCTGGCAGTCTATTAGGAGAACCAATTCCTTACGAGAAGACCTTTTGGGGTGCCTTGGAGGACCCCGTTCGATACCTTACGACGTTCATTGCATTCACGCAAATAGGCATGATGGTAGCACCAACAAGTATAGCATCGCAATATGTTATACAGGCCTCCAGGGGAGCAGTTATTGTATCCTTGGTTTGGTTTTTGTATCGATGGAAAACAAATGTGCTAACCCGTGCATTGGCTACGAAGAATGTGGCAGGGTTTGATCGGGATAGGTTACTGGCTCTGGATAAACTTTCATCCATTGGACTATTTGTCCTTGGCTTAATGGCTTTTGCCGAAGCTTGTGGTGTGGCTGTTCAGTCTATTCTTACTGTTGGTGGAATTGGAGGTGAGATCCAGCTTCCTGTGATCAAATTTCATCATTCTTTCTTGTATTCAGGAGTCGCTACTGCTTTTGCTGCAAAGGACGTCCTCGGAAATGTCCTTAGTGGTTTAGTCATGCAATTTTCGAAGCCCTTCTCAATTGGAGACACAATAAAGGCTGGTTCGGTAGAAGGTCAGGTGGTTGAAATGGGACTAACGACGACATCATTGCTTAGTGCTGAGAAATTTCCCGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGGCTGGTTCGGTAGAAGGTCAGGTGGTTGAAATGGGACTAACGACGACATCATTGCTTAGTGCTGAGAAATTTCCCGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGGTTATAACGAACAAATCACGAGCTCAATGGCGATCGATGACCGCTAAAATCCCTCTGCAAGTTGATGATTTCAGTAAGATTGCTCAAATAGGAGAAGAGATAAAGAGTATGCTAAGATCAAACCCAAATGTGTTTTTGGAGAAGGAAGCTCCTTATTGCTATCTCTCCCGCGTTGAAAGTTCGTTTTCTGAGTTAACTCTCGGCTACAACCTCAAACATATGGTATGTTTTGTCCCGTTTCTTACTACGCATTGGGTTCCATTATTCATTGGTTTAGGGTTCATTTATATCGAATTTCGCACTATTATCATACTTTGA 1770 42.09 MAGIRLSMLKRRLCDWKPLSFQCFDYIECGNYAHSLRVTVRSSFALLNHKYYSILKSENVATTHSGAACIEPLAAKNYYKTKPLTAFSLMYSNSQLRNTVLLSMSNPLYNYRSYSSSSGNKVGDYRDVGVKAASGTDEGDVNTTSILGGDWHEKVKDAYQSAVEAVSFSGQRAKAVSDEWTPYIDQLFDAHPYLKNVIVPVSSTLTASVLAWVVMPKVLRRFHKYATSGPAALLSGSLLGEPIPYEKTFWGALEDPVRYLTTFIAFTQIGMMVAPTSIASQYVIQASRGAVIVSLVWFLYRWKTNVLTRALATKNVAGFDRDRLLALDKLSSIGLFVLGLMAFAEACGVAVQSILTVGGIGGEIQLPVIKFHHSFLYSGVATAFAAKDVLGNVLSGLVMQFSKPFSIGDTIKAGSVEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQAGSVEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQVITNKSRAQWRSMTAKIPLQVDDFSKIAQIGEEIKSMLRSNPNVFLEKEAPYCYLSRVESSFSELTLGYNLKHMVCFVPFLTTHWVPLFIGLGFIYIEFRTIIIL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49122284 49126278 + Bma024309.1 Bma06g01199 84701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01199 589 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 105 448 - -
Bma06g01199 589 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 449 558 - -
Bma06g01199 589 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 362 IPR011014 GO:0016020
Bma06g01199 589 Gene3D - 282 403 - -
Bma06g01199 589 Gene3D - 404 448 IPR023408 -
Bma06g01199 589 Gene3D - 449 488 IPR023408 -
Bma06g01199 589 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 105 448 - -
Bma06g01199 589 Pfam Mechanosensitive ion channel 450 537 IPR006685 GO:0016020|GO:0055085
Bma06g01199 589 Pfam Mechanosensitive ion channel 378 448 IPR006685 GO:0016020|GO:0055085
Bma06g01199 589 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 449 558 - -
Bma06g01199 589 SUPERFAMILY Sm-like ribonucleoproteins 388 447 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01198 Bma-Chr6:49117424 Bma06g01199 Bma-Chr6:49122284 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01199 K22047 - csin:114308416 549.28