Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01199 ATGGCTGGAATTAGGTTATCTATGTTGAAGAGGCGACTGTGTGATTGGAAGCCACTTTCCTTTCAATGTTTCGATTATATTGAATGTGGAAATTATGCTCATAGTCTTCGTGTAACAGTCAGATCATCGTTTGCTCTTCTAAATCACAAGTATTACTCAATTCTGAAATCTGAAAATGTTGCCACTACCCATTCCGGAGCAGCATGTATAGAACCTCTGGCTGCCAAAAACTATTATAAAACCAAACCCTTGACTGCATTTTCACTCATGTATTCAAATTCTCAATTACGAAATACTGTTCTTCTTTCTATGTCAAACCCACTATATAATTATCGATCATATTCATCATCATCTGGTAATAAAGTGGGGGACTACAGAGACGTGGGAGTTAAGGCAGCGTCTGGCACTGATGAAGGGGATGTTAATACCACGAGCATTCTTGGAGGTGATTGGCATGAAAAAGTTAAGGATGCTTATCAAAGTGCTGTAGAGGCTGTATCATTTTCTGGGCAGAGGGCAAAAGCAGTATCTGATGAATGGACACCTTATATTGATCAATTGTTTGATGCACATCCATATCTCAAAAATGTGATTGTTCCGGTGAGTTCTACATTGACTGCCTCTGTTTTGGCGTGGGTGGTGATGCCTAAGGTGTTGAGAAGATTTCATAAGTATGCAACATCAGGTCCGGCTGCTCTTCTCTCTGGCAGTCTATTAGGAGAACCAATTCCTTACGAGAAGACCTTTTGGGGTGCCTTGGAGGACCCCGTTCGATACCTTACGACGTTCATTGCATTCACGCAAATAGGCATGATGGTAGCACCAACAAGTATAGCATCGCAATATGTTATACAGGCCTCCAGGGGAGCAGTTATTGTATCCTTGGTTTGGTTTTTGTATCGATGGAAAACAAATGTGCTAACCCGTGCATTGGCTACGAAGAATGTGGCAGGGTTTGATCGGGATAGGTTACTGGCTCTGGATAAACTTTCATCCATTGGACTATTTGTCCTTGGCTTAATGGCTTTTGCCGAAGCTTGTGGTGTGGCTGTTCAGTCTATTCTTACTGTTGGTGGAATTGGAGGTGAGATCCAGCTTCCTGTGATCAAATTTCATCATTCTTTCTTGTATTCAGGAGTCGCTACTGCTTTTGCTGCAAAGGACGTCCTCGGAAATGTCCTTAGTGGTTTAGTCATGCAATTTTCGAAGCCCTTCTCAATTGGAGACACAATAAAGGCTGGTTCGGTAGAAGGTCAGGTGGTTGAAATGGGACTAACGACGACATCATTGCTTAGTGCTGAGAAATTTCCCGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGGCTGGTTCGGTAGAAGGTCAGGTGGTTGAAATGGGACTAACGACGACATCATTGCTTAGTGCTGAGAAATTTCCCGTTATCGTTCCTAATTCGCTGTTCTCTAGCCAGGTTATAACGAACAAATCACGAGCTCAATGGCGATCGATGACCGCTAAAATCCCTCTGCAAGTTGATGATTTCAGTAAGATTGCTCAAATAGGAGAAGAGATAAAGAGTATGCTAAGATCAAACCCAAATGTGTTTTTGGAGAAGGAAGCTCCTTATTGCTATCTCTCCCGCGTTGAAAGTTCGTTTTCTGAGTTAACTCTCGGCTACAACCTCAAACATATGGTATGTTTTGTCCCGTTTCTTACTACGCATTGGGTTCCATTATTCATTGGTTTAGGGTTCATTTATATCGAATTTCGCACTATTATCATACTTTGA 1770 42.09 MAGIRLSMLKRRLCDWKPLSFQCFDYIECGNYAHSLRVTVRSSFALLNHKYYSILKSENVATTHSGAACIEPLAAKNYYKTKPLTAFSLMYSNSQLRNTVLLSMSNPLYNYRSYSSSSGNKVGDYRDVGVKAASGTDEGDVNTTSILGGDWHEKVKDAYQSAVEAVSFSGQRAKAVSDEWTPYIDQLFDAHPYLKNVIVPVSSTLTASVLAWVVMPKVLRRFHKYATSGPAALLSGSLLGEPIPYEKTFWGALEDPVRYLTTFIAFTQIGMMVAPTSIASQYVIQASRGAVIVSLVWFLYRWKTNVLTRALATKNVAGFDRDRLLALDKLSSIGLFVLGLMAFAEACGVAVQSILTVGGIGGEIQLPVIKFHHSFLYSGVATAFAAKDVLGNVLSGLVMQFSKPFSIGDTIKAGSVEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQAGSVEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQVITNKSRAQWRSMTAKIPLQVDDFSKIAQIGEEIKSMLRSNPNVFLEKEAPYCYLSRVESSFSELTLGYNLKHMVCFVPFLTTHWVPLFIGLGFIYIEFRTIIIL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49122284 49126278 + Bma024309.1 Bma06g01199 84701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01199 589 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 105 448 - -
Bma06g01199 589 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 449 558 - -
Bma06g01199 589 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 288 362 IPR011014 GO:0016020
Bma06g01199 589 Gene3D - 282 403 - -
Bma06g01199 589 Gene3D - 404 448 IPR023408 -
Bma06g01199 589 Gene3D - 449 488 IPR023408 -
Bma06g01199 589 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 105 448 - -
Bma06g01199 589 Pfam Mechanosensitive ion channel 450 537 IPR006685 GO:0016020|GO:0055085
Bma06g01199 589 Pfam Mechanosensitive ion channel 378 448 IPR006685 GO:0016020|GO:0055085
Bma06g01199 589 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 449 558 - -
Bma06g01199 589 SUPERFAMILY Sm-like ribonucleoproteins 388 447 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01199 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csin:114308416 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01198 Bma-Chr6:49117424 Bma06g01199 Bma-Chr6:49122284 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01199 . 109 558 Mechanosensitive Ion Channel Family AT4G00290 57.0 4.0e-130 461.8
Bma06g01198 . 191 453 Mechanosensitive Ion Channel Family AT4G00290 55.8 1.6e-78 290.4
Bma02g00115 . 256 813 Mechanosensitive Ion Channel Family AT5G10490 58.3 3.5e-169 592.0
Bma01g01375 . 11 511 Mechanosensitive Ion Channel Family AT5G10490 59.5 3.5e-153 538.9
Bma02g00115 . 257 796 Mechanosensitive Ion Channel Family AT1G58200 55.7 4.8e-158 555.1
Bma01g01375 . 11 518 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-150 528.5
Bma12g00910 . 63 921 Mechanosensitive Ion Channel Family AT1G53470 54.2 2.9e-248 855.1
Bma03g00619 . 73 896 Mechanosensitive Ion Channel Family AT1G53470 55.9 6.0e-246 847.4
Bma12g00910 . 63 924 Mechanosensitive Ion Channel Family AT3G14810 52.6 3.0e-234 808.5
Bma03g00619 . 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.6 2.1e-227 785.8
Bma12g00910 . 63 922 Mechanosensitive Ion Channel Family AT1G78610 60.9 2.1e-280 961.8
Bma03g00619 . 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 2.5e-260 895.2
Bma12g00910 . 228 918 Mechanosensitive Ion Channel Family AT2G17000 59.8 3.3e-225 778.5
Bma03g00619 . 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.9 9.6e-225 776.9
Bma04g00115 . 16 775 Mechanosensitive Ion Channel Family AT5G19520 50.2 1.4e-195 679.9
Bma04g00115 . 61 775 Mechanosensitive Ion Channel Family AT5G12080 56.1 1.2e-210 729.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01199 Bma_Chr06 FPKM 1.304048 0.97171 4.688535 3.11928 4.645744 5.621446 6.801313 3.368758 3.565886 2.610167