Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01200 ATGGAATCTGGGTCTGGTTCTTTAGCTGCGCCAAACATCACTGGGGTGTCCACCTATGGCGGACGATACATTACGTACAACGTGTACGGGAATCTCTTTGAAGTTTCCAGTAAGTACGTACCTCCTATTCGACCGCTTGGGAGGGGTGCTTATGGTATTGTCTGTGCTGCTGTGAATTTGGAGACAAGAGAGGAGGTGGCCATCAAGAAGGTTGGTAATGCATTTGACAACAGAATAGATGCCAAAAGGACATTGCGAGAAATTAAACTTCTTCTGCATATGGATCATGAAAATGTCATTGCCATTAAAGATATTATACGACCTCCGGTGGTAGAAAACTTTAATGATGTGTACATGGTTTATGAGCTGATGGACACAGATCTCCATCAGATAATAAAATCGAATCAACAGTTGACAGATGATCATTGCCGGTATTTTTTGTACCAGTTGTTACGAGGGCTAAAATACGTCCATTCTGCCAATGTTCTGCATCGCGATCTAAAGCCCAGCAATTTATTTCTCAATGCAAACTGTGACCTTAAGATTGGAGACTTTGGGCTTGCAAGGACAACATCCGAGACAGATTTCATGACTGAATATGTTGTTACTCGGTGGTATCGTGCGCCGGAATTGCTCCTTAATTGTTCAGAATACACAGGAGCAATTGATATTTGGTCAGTAGGATGTATATTAGCTGAAATCAACACGGGACAACCACTCTTTCCGGGCAGAGACTATATTCATCAGCTCAAACTCATCACCGAGCTGATTGGTTCACCGGACGAATCTAGCCTTGGATTCTTACGAAACGATAGTACACGAAGATATGTTCGACAACTTCCTCAGCATCCAATGCAACAATTTTCCTCTCGATTTCCAACTATGTCACCTGGAGCCGCTGATTTACTAGCGAAGATGCTCGTATTCGATCCCAGCAAACGCATCACTGTCGAAGAGGCGCTTTGTCACCCATACATGGCTTCTCTTCACGATATCAATGAGGAACCAGTCTGTCCAAGGCCATTCAGTTTTGATTTTGAGCAGCCTTCGTATACAGAAATAAACATCAAAGAGCTCATATGGAGGGAGTCTGTCAGGTTCAATCCCGATCCAACCCATTAG 1122 43.58 MESGSGSLAAPNITGVSTYGGRYITYNVYGNLFEVSSKYVPPIRPLGRGAYGIVCAAVNLETREEVAIKKVGNAFDNRIDAKRTLREIKLLLHMDHENVIAIKDIIRPPVVENFNDVYMVYELMDTDLHQIIKSNQQLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILAEINTGQPLFPGRDYIHQLKLITELIGSPDESSLGFLRNDSTRRYVRQLPQHPMQQFSSRFPTMSPGAADLLAKMLVFDPSKRITVEEALCHPYMASLHDINEEPVCPRPFSFDFEQPSYTEINIKELIWRESVRFNPDPTH 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49129573 49133503 - Bma024310.1 Bma06g01200 84702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01200 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 16 372 - -
Bma06g01200 373 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Bma06g01200 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 372 - -
Bma06g01200 373 CDD STKc_TEY_MAPK 33 369 - -
Bma06g01200 373 ProSitePatterns MAP kinase signature. 75 178 IPR003527 GO:0004707|GO:0005524|GO:0006468
Bma06g01200 373 Gene3D Transferase(Phosphotransferase) domain 1 124 353 - -
Bma06g01200 373 Gene3D Phosphorylase Kinase; domain 1 23 363 - -
Bma06g01200 373 SUPERFAMILY Protein kinase-like (PK-like) 43 333 IPR011009 -
Bma06g01200 373 ProSiteProfiles Protein kinase domain profile. 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01200 373 Pfam Protein kinase domain 44 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01200 373 SMART serkin_6 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01200 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01200 Bma-Chr6:49129573 Bma14g00601 Bma-Chr14:6518582 0 dispersed
Bma06g01200 Bma-Chr6:49129573 Bma14g01860 Bma-Chr14:39982154 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66558 PF00069 Pkinase 2.10E-70 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01200 K20600 - twl:119984511 669.848