Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01236 ATGAGTTTTGGGGGATTTCTTGATCATCCTCACGGTTCTAGTGGCGGTGGCGCAAGAATCGTCGCCGATTTACCATTCGCCGCCAGCAACGCCGAAACCGCCATTAATATGGCTTCAGCTACAATAGCTCAGCCTCGTCTTCTTTCTCAATCTTTCGCCAAATCCATTTTCAACTCTCCTGGCCTCTCTTTGGCTCTTACTGATATTGATGTGCAAGGAGACATGGCTGCTAGAATGGCTGAGAATTTAGAGCCTAATCCTTGTAGAAGAAGCAGAGATGAAGAACACGAGAGCAAATCTGCCAGCGATAACGTCGACGGTGGCTCAGGCGACAATCTTGACGGTGCTGATAATCGGCTGAGGAAGAAGAGATATCACCGACACACTCCTCAACAAATCCAAGAACTAGAATCTCTGTTTAAGGACTGTCCTCATCCTGATGAGAAACAAAGATTGGATCTTAGCAAAAGGCTTTGTTTGGAAATCCAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACGCAGATGAAGACTCAATTGGAACGCCATGAAAATACATTATTGAGGCAGGACAACAATAAGCTAAGAGCGGAAAACGTGTCGATACGCGACGCCATGAGAAACCCTATGTGCTCAAACTGTGGTGGCCCTGCGATTATCGGTGAAATCTCGCTCGAAGAGCAGCATTTGAGGATTGAAAATGCGCGATTGAAGGACGAGTTAGACCGTGTTTGTTCGCTTGCTGGAAAGTTTTTGGGTCGACCAATTTCATCGCTGTCGGCTTCAATTGCACCTCCATTGCCAAGCTCAAGCTTAGAGCTTGGAGTTGGGAATGAAATTGGGTATGGCGGTTTGAGCACTGTGTCGACGACCATAGCTATAGGGCCGGATTTCAGCAGTGGAATTTCGAGTCATTTGCCAATTGTGCCTTCAACGAGAACAACGAGTTGTTTGACAGGGCTCGATGGGTCGACCGAGAGATCCATGTTTCTTGAGCTTGCTTTGGCTGCAATGGATGAACTAGTTCGGATGGCACAGACCAATGAGCCTCTCTGGATTAGAAGCTCGGAAGGTGGACGGGAAACGACATTAAACCACGAAGAGTACATTGTAGTCTTCAATCCTTGCATTGGATTAAAGCCGAACGGGTTTGTTACCGAAGCATCCAAGGAAACTGCAATGGTCACAATCGACGGCTTGGCTCTCGTTGAGACATTGATGGATTCAGCTCGATGGGCCGAGATGTTTTCGTGTATGATCGCTAGGACAACTACGACTGACGTCATTTCGAGTGGTATGGGTGGAACAAGAAATGGTGCACTTCAATTGATGCACGCCGAGCTTCAAGTTCTTTCGCCTTTGGTTCCGTTTCGGGAGATAAACTTCCTCCGGTTTTGCAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGACGTCTCCATTGATGGCCTCAGAGAAGCTCCATTTTTCAACTGCAGGAGGCTTCCTTCCGGCTGCATAGTTCAAGATATGCCAAATGGGTATTCCAAGATTACGTGGGTGGAGCATGCAGATTACGATGAGAGCCTTGTTCATCAATTGTACCGGCCTCTTCTAAGCTCCGGCATGGCCTTCGGCGCCCAGCGGTGGTTGGCCACTCTCCAGCGGCAATGCGAGTGTCTCCACATTCTCATTTCCACCGACAACCCCTCTCGCGATCATGCAGCGATTACTGCTGGTGGCCGGAGAAGCATGCTGAAGCTGGCGCAGAGGATGACAAACAACTTTTGCGCCGGAGTTTGCGCTTCGACGGTGCACAAGTGGAACAAACTCAATGCCGGGAATGTGGACGAGGATGTGCAGGTGATGACCCGGAAGAGCGTGGATGATCCGGGAGAGCCGCCGGGTGTTCTGCTCAGCGCCGCCACCTCCGTCTGGCTCCCCGTATCTCCTCAAAGACTGTTTGACTTTTTGCGCGATGAACGGCTGAGGAGCGAGTGGGATATTTTATCCAACGGTGGTCCAATGCAGGAGATGGCCCACATCGCTAAAGGCCAAGATCACGGCAACTGCGTCTCTCTCCTCCGAGCCAGCGCTATAAACGCCAGCCAGAGCAGCATGCTAATCCTACAGGAGACTTGCATAGATGTGGCCGGAGCCCTTGTCGTGTACGCGCCAGTGGACATCCCAGCCATGCATGTGGTGATGAATGGCGGCGATTCAGCCTACGTGGCATTACTCCCATCCGGATTTGCGATAGTCCCGGATGGGCCAGATTCTCGCGGTGGATCTTCCACCGGCGGTAGCCCGAACGGCCGTGAAGGCCCACAGAGAGTGAGTGGGTCCCTCCTGACGGTGGCTTTCCAGATTCTTGTGAATAGCTTGCCCACTGACAAGCTCACCGTGGAATCGGTGGAGACGGTCAACAATTTAATCACGTGCACGGTGCAGAAGATCAAGGCCGCTCTTCAATGTGAAAGCTGA 2463 50.87 MSFGGFLDHPHGSSGGGARIVADLPFAASNAETAINMASATIAQPRLLSQSFAKSIFNSPGLSLALTDIDVQGDMAARMAENLEPNPCRRSRDEEHESKSASDNVDGGSGDNLDGADNRLRKKRYHRHTPQQIQELESLFKDCPHPDEKQRLDLSKRLCLEIQQVKFWFQNRRTQMKTQLERHENTLLRQDNNKLRAENVSIRDAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCSLAGKFLGRPISSLSASIAPPLPSSSLELGVGNEIGYGGLSTVSTTIAIGPDFSSGISSHLPIVPSTRTTSCLTGLDGSTERSMFLELALAAMDELVRMAQTNEPLWIRSSEGGRETTLNHEEYIVVFNPCIGLKPNGFVTEASKETAMVTIDGLALVETLMDSARWAEMFSCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPFREINFLRFCKQHAEGVWAVVDVSIDGLREAPFFNCRRLPSGCIVQDMPNGYSKITWVEHADYDESLVHQLYRPLLSSGMAFGAQRWLATLQRQCECLHILISTDNPSRDHAAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVQVMTRKSVDDPGEPPGVLLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINASQSSMLILQETCIDVAGALVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGGSSTGGSPNGREGPQRVSGSLLTVAFQILVNSLPTDKLTVESVETVNNLITCTVQKIKAALQCES 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49558018 49562399 - Bma024343.1 Bma06g01236 84738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01236 820 Coils Coil 173 200 - -
Bma06g01236 820 SMART START_1 332 553 IPR002913 GO:0008289
Bma06g01236 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 817 IPR042160 -
Bma06g01236 820 Pfam Homeodomain 122 177 IPR001356 GO:0003677
Bma06g01236 820 ProSiteProfiles 'Homeobox' domain profile. 119 179 IPR001356 GO:0003677
Bma06g01236 820 Pfam START domain 332 553 IPR002913 GO:0008289
Bma06g01236 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 64 817 - -
Bma06g01236 820 SUPERFAMILY Bet v1-like 581 813 - -
Bma06g01236 820 MobiDBLite consensus disorder prediction 85 102 - -
Bma06g01236 820 MobiDBLite consensus disorder prediction 750 770 - -
Bma06g01236 820 MobiDBLite consensus disorder prediction 82 117 - -
Bma06g01236 820 SUPERFAMILY Bet v1-like 326 553 - -
Bma06g01236 820 CDD START_ArGLABRA2_like 327 552 - -
Bma06g01236 820 CDD homeodomain 121 179 IPR001356 GO:0003677
Bma06g01236 820 SUPERFAMILY Homeodomain-like 107 179 IPR009057 -
Bma06g01236 820 SMART HOX_1 120 183 IPR001356 GO:0003677
Bma06g01236 820 MobiDBLite consensus disorder prediction 755 770 - -
Bma06g01236 820 Gene3D - 111 195 - -
Bma06g01236 820 ProSitePatterns 'Homeobox' domain signature. 154 177 IPR017970 GO:0000981|GO:0006355
Bma06g01236 820 ProSiteProfiles START domain profile. 323 556 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01044 Bma-Chr2:51980717 Bma06g01236 Bma-Chr6:49558018 0 dispersed
Bma02g01326 Bma-Chr2:55771471 Bma06g01236 Bma-Chr6:49558018 0 dispersed
Bma04g01080 Bma-Chr4:23655765 Bma06g01236 Bma-Chr6:49558018 5.02E-39 dispersed
Bma06g01236 Bma-Chr6:49558018 Bma12g00798 Bma-Chr12:37356095 0 dispersed
Bma13g00826 Bma-Chr13:33125334 Bma06g01236 Bma-Chr6:49558018 0 dispersed
Bma06g01236 Bma-Chr6:49558018 Bma05g00972 Bma-Chr5:48169367 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57517 PF01852 START 5.40E-52 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01236 K09338 - rcu:8258519 1285.01