Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01246 ATGGCTGGTTTAGATTTAAGCTCAGCTTCTCGCTTTATTTATCAACTCCAGCAGCGCCCGGACCTTCATCTCCGACGACCTGCCACAGGCGAAGATGTCTCCAATCCCAACCACTGCGCTGCAGAGGACGACGAGGAAGAAAATACCCACCAGGGCGTTGACCTAATTGCCGCCAACGCTGGACCCGGGGACATAGTAACTCGCCGGCCTAGAGGCAGACCTCCGGGATCCAAAAACAAGCCGAAACCTCCGGTGATCATAACCAGAGAGAGCGCAAACACTTTGCGAGCTCATATACTAGAGGTCACCTCCGGCTCTGACATGTTTGAATCGGTGGCGACTTATGCTCGGAAGCGTCAGAGAGGGATCTGTGTATTGAGCGGAAGTGGAACAGTGACTAACGTCAGCTTACGTCAACCCTCGTCGCCCGGAGCTGTCGTCACGCTACAAGGCCAGTTCGAGATACTGTCTTTAACCGGTTCGTTTTTGCCTCCACCGGCTCCTCCGGGCGCCACCAGTTTGACGATATTCTTGGCCGGCGGACAAGGTCAGGTAGTAGGAGGTAATGTGGTCGGTGCTCTGATTGCCGCAGGTCCGGTCATCGTTATCGCTTCGTCGTTCACAAACGTGGCTTACGAGAGATTACCATTGGACGAAGAGGAGCCCATCCAGCAGCCTTCAGCCGAAGACTCCGGAGCTGGTTCCGGAGGAAATAACCCTTTTCCGAACCCTTCTGGTTTTCCGTTCTTTAATCTTCCGAACCAGAATCAGCTTCCGTCGGTTGACGGCTGGAGCGGAAATTCAGCTGGAAGACCCTCTTACTAA 825 54.18 MAGLDLSSASRFIYQLQQRPDLHLRRPATGEDVSNPNHCAAEDDEEENTHQGVDLIAANAGPGDIVTRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTSGSDMFESVATYARKRQRGICVLSGSGTVTNVSLRQPSSPGAVVTLQGQFEILSLTGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIAAGPVIVIASSFTNVAYERLPLDEEEPIQQPSAEDSGAGSGGNNPFPNPSGFPFFNLPNQNQLPSVDGWSGNSAGRPSY 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49618595 49619419 + Bma024354.1 Bma06g01246 84748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01246 274 MobiDBLite consensus disorder prediction 23 84 - -
Bma06g01246 274 MobiDBLite consensus disorder prediction 221 274 - -
Bma06g01246 274 MobiDBLite consensus disorder prediction 228 274 - -
Bma06g01246 274 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 209 IPR005175 -
Bma06g01246 274 Gene3D - 95 225 - -
Bma06g01246 274 ProSiteProfiles PPC domain profile profile. 92 229 IPR005175 -
Bma06g01246 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 274 IPR014476 GO:0003680
Bma06g01246 274 CDD DUF296 96 179 IPR005175 -
Bma06g01246 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 274 - -
Bma06g01246 274 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00788 Bma-Chr5:44846922 Bma06g01246 Bma-Chr6:49618595 3.94E-72 dispersed
Bma06g01246 Bma-Chr6:49618595 Bma07g00944 Bma-Chr7:35383210 5.01E-99 dispersed
Bma08g00707 Bma-Chr8:42781882 Bma06g01246 Bma-Chr6:49618595 1.53E-67 dispersed
Bma02g01165 Bma-Chr2:53776721 Bma06g01246 Bma-Chr6:49618595 3.72E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01246 - - nnu:104610369 362.844