Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01271 ATGGCACTTTGTAATAAGCTAGGGAGCTTCTTTAGACAGACTATTTCTCAGAATGGACCAGCTTCAATGGCGCCTATGCTTAATTCTGTTCGCCACATGTCTTCAAAGCTTTTTATTGGAGGTCTTTCATATGGAACTGATGATCAATCTCTCAGGGATGCGTTTTCATCTTTTGGTGATGTTGTTGATGCAAAGGTGATTACTGATAGAGACACAGGCAGGTCTCGTGGATTTGGGTTTGTCAACTTTACTGATGATGAATCCGCTAGCTCTGCAATGTCTGCCATGGATGGTCAGGAGCTTAATGGGCGAAACATTCGAGTGAGTTTGGCAAATGATAGACCAGCTGCTCCTCGTGGTTATGGCGGTGGTGGTGGTTATGGCGGCGGCGGCGGTGGTGGTTTTCGAGGCGATGGAGGGTACTGA 426 46.95 MALCNKLGSFFRQTISQNGPASMAPMLNSVRHMSSKLFIGGLSYGTDDQSLRDAFSSFGDVVDAKVITDRDTGRSRGFGFVNFTDDESASSAMSAMDGQELNGRNIRVSLANDRPAAPRGYGGGGGYGGGGGGGFRGDGGY 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49806530 49807496 - Bma024379.1 Bma06g01271 84773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01271 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Bma06g01271 141 SUPERFAMILY RNA-binding domain, RBD 34 140 IPR035979 GO:0003676
Bma06g01271 141 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 141 - -
Bma06g01271 141 MobiDBLite consensus disorder prediction 113 141 - -
Bma06g01271 141 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 141 - -
Bma06g01271 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 107 IPR000504 GO:0003723
Bma06g01271 141 Gene3D - 21 141 IPR012677 -
Bma06g01271 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01271 - - - qlo:115950521 187.578
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01195 Bma06g01271 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00783 Bma-Chr1:7174568 Bma06g01271 Bma-Chr6:49806530 6.17E-15 dispersed
Bma03g00375 Bma-Chr3:2861933 Bma06g01271 Bma-Chr6:49806530 2.22E-09 dispersed
Bma03g00552 Bma-Chr3:4542593 Bma06g01271 Bma-Chr6:49806530 1.27E-24 dispersed
Bma03g00850 Bma-Chr3:8185672 Bma06g01271 Bma-Chr6:49806530 8.78E-41 dispersed
Bma06g01271 Bma-Chr6:49806530 Bma12g00965 Bma-Chr12:41633588 7.34E-38 dispersed
Bma14g01969 Bma-Chr14:42684060 Bma06g01271 Bma-Chr6:49806530 8.85E-15 dispersed
Bma02g01289 Bma-Chr2:55100964 Bma06g01271 Bma-Chr6:49806530 3.96E-30 transposed
Bma07g00702 Bma-Chr7:15565891 Bma06g01271 Bma-Chr6:49806530 2.61E-11 transposed
Bma11g01023 Bma-Chr11:46595396 Bma06g01271 Bma-Chr6:49806530 1.19E-09 transposed
Bma14g00722 Bma-Chr14:7932247 Bma06g01271 Bma-Chr6:49806530 1.11E-12 transposed
Bma02g01195 Bma-Chr2:54043935 Bma06g01271 Bma-Chr6:49806530 3.19E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g925 . . . . . Bpe14g00853 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0247 . Cone7ag0411 . . . . . . . Bda11g00323 . . Bpe13g00870 Bma02g01195 Bma06g01271 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000800 6 2 2 5 5 2 3 2 2 3 2 2 5 3 2 4 2 6 3 2 2 3 3 2 2 2 2 8 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01271 Bma_Chr06 FPKM 4.248395 4.675478 20.402752 19.129219 55.914257 53.849979 60.296982 14.818122 16.936947 17.562042