Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma06g01280 | ATGGGTCCGATCGGTACGCCCTACGAAGACGGCGTCTTCTTTTTGTCGATCGAGCTGCCTGAAGATTACCCCTACTCTCCTCCCCTCATCAAGTTTCTAACCAAGGTGATGCTTCATTCTTTGATCATCTCATTTCTTTCCTTAAAATTTGAGAACAAAGTGCAGGTCTATCATCCAAACATTGACGAAGATGGGAAGGTTTATATGGACATTCTGGAAGAAGAAGAGTGGAGACCTGTGTTCTGCATGGAGACAATTTTGCTCTCTCTCTGCTCTCTTGAAACGGACTTGCACACAAAAAGAACTGGCCATGCTGATTTTGCTGATAAGACCTCAGAAGCTGCAAAACCAATAAGTTTGGAGGTTCCCAAAGTAGCTGAAGAAGCAAAGGAGGCTGCAGATGCTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCGGAGGTTGACAAAAAGTTGCTTGAAGAACTTGAAGCAATGGGGTTCTCAACAGCACGTGCCACACGCGCCCTTCATTACTCTGGTAATTCTGGTGTTGAGGCTGCTGTAAATTGGGTAGTTGAACATGAAGACGATTCTGACATAGATCAGATGCCTTTGGTACCTTTGAACACTAGGGCTGAAGCTCAGAAGCCTTCTCTTTCACCTGAAGAAATAAAAGCTAAACAACAAGAGCTAAGAGAACGAGCCCGCAAGAAAAAAGAAGAGGAAGAAAAGAAAAAAGAGAGAGAAAGGGAAAAGGAGAGAATCCGAGTGGGAAAGGAGCTTTTAGAGGCAAAGAGAATTGAAGAAGATAATGAACGGAAAAGGATAATGGCTTTGCGAAAAGCTGAAAAGGATGAAGAGAAACGAGCTCGGGATAAAATTCGTCAAAAATTAGAGGAGGACAAGGCTGAAAGAAGAAGGAAGCTTGGATTGGCACCAGAAGATCCTTCTACTGTAAAACCTTCTTCACCTGTTGTTGAGGAGAAAAAGAGCATGTTGCCAGTTAGGCCTGCCACGAAGACTGAGCAAATGCGAGAATGTTTGCGAACTCTTAAACAGCATCACAAGGCAAGTGCATTCAGACTAGTGAAGCGAGCATTCCAGACTCTTCTTACATACGTGGGGAATGTTGCCCGAAATCCCGGTGATGAAAAATTTAGAAAGATAAGACTCACTAACCAATCTTTCCAGGAAAGAGTTGGCGGATTGAAAGGCGGAGTGGAGTTTCTGGAGCTGTGCGGGTTCGAGAAAGCTGAAGGAGATGAGTTCTTGTTTCTGCCAAGAGAGAAAGTGGACATTGGGGTGTTGAATTCAGCTGGTTCAGAGCTGGACTCTGCTTTGAAGAATCCCTTTTTTGGGGTTCTTTAA | 1350 | 44.22 | MGPIGTPYEDGVFFLSIELPEDYPYSPPLIKFLTKVMLHSLIISFLSLKFENKVQVYHPNIDEDGKVYMDILEEEEWRPVFCMETILLSLCSLETDLHTKRTGHADFADKTSEAAKPISLEVPKVAEEAKEAADASTSQPEEMVVPEVDKKLLEELEAMGFSTARATRALHYSGNSGVEAAVNWVVEHEDDSDIDQMPLVPLNTRAEAQKPSLSPEEIKAKQQELRERARKKKEEEEKKKEREREKERIRVGKELLEAKRIEEDNERKRIMALRKAEKDEEKRARDKIRQKLEEDKAERRRKLGLAPEDPSTVKPSSPVVEEKKSMLPVRPATKTEQMRECLRTLKQHHKASAFRLVKRAFQTLLTYVGNVARNPGDEKFRKIRLTNQSFQERVGGLKGGVEFLELCGFEKAEGDEFLFLPREKVDIGVLNSAGSELDSALKNPFFGVL | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 49889016 | 49903895 | - | Bma024389.1 | Bma06g01280 | 84782 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma06g01280 | 449 | PANTHER | F13M7.16 PROTEIN | 90 | 449 | - | - | |
Bma06g01280 | 449 | MobiDBLite | consensus disorder prediction | 212 | 247 | - | - | |
Bma06g01280 | 449 | CDD | PUB_UBA_plant | 342 | 449 | - | - | |
Bma06g01280 | 449 | SMART | PGNneu | 359 | 422 | - | - | |
Bma06g01280 | 449 | MobiDBLite | consensus disorder prediction | 275 | 307 | - | - | |
Bma06g01280 | 449 | MobiDBLite | consensus disorder prediction | 206 | 247 | - | - | |
Bma06g01280 | 449 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 138 | IPR000608 | - | |
Bma06g01280 | 449 | SUPERFAMILY | UBA-like | 131 | 200 | IPR009060 | GO:0005515 | |
Bma06g01280 | 449 | Pfam | Ubiquitin-conjugating enzyme | 1 | 112 | IPR000608 | - | |
Bma06g01280 | 449 | CDD | UBCc | 1 | 93 | IPR000608 | - | |
Bma06g01280 | 449 | SMART | ubc_7 | 1 | 142 | - | - | |
Bma06g01280 | 449 | Coils | Coil | 218 | 252 | - | - | |
Bma06g01280 | 449 | Coils | Coil | 274 | 298 | - | - | |
Bma06g01280 | 449 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 147 | 188 | IPR015940 | - | |
Bma06g01280 | 449 | Gene3D | - | 149 | 195 | - | - | |
Bma06g01280 | 449 | Pfam | PUB domain | 357 | 426 | IPR018997 | - | |
Bma06g01280 | 449 | SUPERFAMILY | UBC-like | 1 | 108 | IPR016135 | - | |
Bma06g01280 | 449 | SUPERFAMILY | PUG domain-like | 342 | 445 | IPR036339 | - | |
Bma06g01280 | 449 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 144 | IPR016135 | - | |
Bma06g01280 | 449 | MobiDBLite | consensus disorder prediction | 275 | 335 | - | - | |
Bma06g01280 | 449 | CDD | UBA_PUB_plant | 147 | 195 | - | - | |
Bma06g01280 | 449 | PANTHER | F13M7.16 PROTEIN | 90 | 449 | - | - | |
Bma06g01280 | 449 | Pfam | UBA/TS-N domain | 153 | 184 | IPR015940 | - | |
Bma06g01280 | 449 | Gene3D | - | 338 | 439 | - | - | |
Bma06g01280 | 449 | SMART | uba_6 | 149 | 187 | IPR015940 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g01280 | Bma-Chr6:49889016 | Bma05g00850 | Bma-Chr5:46045097 | 2.83E-17 | dispersed | |
Bma02g01203 | Bma-Chr2:54107817 | Bma06g01280 | Bma-Chr6:49889016 | 4.75E-13 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma06g01280 | K24348 | - | jre:109003439 | 528.865 |