Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01280 ATGGGTCCGATCGGTACGCCCTACGAAGACGGCGTCTTCTTTTTGTCGATCGAGCTGCCTGAAGATTACCCCTACTCTCCTCCCCTCATCAAGTTTCTAACCAAGGTGATGCTTCATTCTTTGATCATCTCATTTCTTTCCTTAAAATTTGAGAACAAAGTGCAGGTCTATCATCCAAACATTGACGAAGATGGGAAGGTTTATATGGACATTCTGGAAGAAGAAGAGTGGAGACCTGTGTTCTGCATGGAGACAATTTTGCTCTCTCTCTGCTCTCTTGAAACGGACTTGCACACAAAAAGAACTGGCCATGCTGATTTTGCTGATAAGACCTCAGAAGCTGCAAAACCAATAAGTTTGGAGGTTCCCAAAGTAGCTGAAGAAGCAAAGGAGGCTGCAGATGCTAGTACTAGTCAGCCTGAAGAAATGGTTGTGCCGGAGGTTGACAAAAAGTTGCTTGAAGAACTTGAAGCAATGGGGTTCTCAACAGCACGTGCCACACGCGCCCTTCATTACTCTGGTAATTCTGGTGTTGAGGCTGCTGTAAATTGGGTAGTTGAACATGAAGACGATTCTGACATAGATCAGATGCCTTTGGTACCTTTGAACACTAGGGCTGAAGCTCAGAAGCCTTCTCTTTCACCTGAAGAAATAAAAGCTAAACAACAAGAGCTAAGAGAACGAGCCCGCAAGAAAAAAGAAGAGGAAGAAAAGAAAAAAGAGAGAGAAAGGGAAAAGGAGAGAATCCGAGTGGGAAAGGAGCTTTTAGAGGCAAAGAGAATTGAAGAAGATAATGAACGGAAAAGGATAATGGCTTTGCGAAAAGCTGAAAAGGATGAAGAGAAACGAGCTCGGGATAAAATTCGTCAAAAATTAGAGGAGGACAAGGCTGAAAGAAGAAGGAAGCTTGGATTGGCACCAGAAGATCCTTCTACTGTAAAACCTTCTTCACCTGTTGTTGAGGAGAAAAAGAGCATGTTGCCAGTTAGGCCTGCCACGAAGACTGAGCAAATGCGAGAATGTTTGCGAACTCTTAAACAGCATCACAAGGCAAGTGCATTCAGACTAGTGAAGCGAGCATTCCAGACTCTTCTTACATACGTGGGGAATGTTGCCCGAAATCCCGGTGATGAAAAATTTAGAAAGATAAGACTCACTAACCAATCTTTCCAGGAAAGAGTTGGCGGATTGAAAGGCGGAGTGGAGTTTCTGGAGCTGTGCGGGTTCGAGAAAGCTGAAGGAGATGAGTTCTTGTTTCTGCCAAGAGAGAAAGTGGACATTGGGGTGTTGAATTCAGCTGGTTCAGAGCTGGACTCTGCTTTGAAGAATCCCTTTTTTGGGGTTCTTTAA 1350 44.22 MGPIGTPYEDGVFFLSIELPEDYPYSPPLIKFLTKVMLHSLIISFLSLKFENKVQVYHPNIDEDGKVYMDILEEEEWRPVFCMETILLSLCSLETDLHTKRTGHADFADKTSEAAKPISLEVPKVAEEAKEAADASTSQPEEMVVPEVDKKLLEELEAMGFSTARATRALHYSGNSGVEAAVNWVVEHEDDSDIDQMPLVPLNTRAEAQKPSLSPEEIKAKQQELRERARKKKEEEEKKKEREREKERIRVGKELLEAKRIEEDNERKRIMALRKAEKDEEKRARDKIRQKLEEDKAERRRKLGLAPEDPSTVKPSSPVVEEKKSMLPVRPATKTEQMRECLRTLKQHHKASAFRLVKRAFQTLLTYVGNVARNPGDEKFRKIRLTNQSFQERVGGLKGGVEFLELCGFEKAEGDEFLFLPREKVDIGVLNSAGSELDSALKNPFFGVL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49889016 49903895 - Bma024389.1 Bma06g01280 84782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01280 449 PANTHER F13M7.16 PROTEIN 90 449 - -
Bma06g01280 449 MobiDBLite consensus disorder prediction 212 247 - -
Bma06g01280 449 CDD PUB_UBA_plant 342 449 - -
Bma06g01280 449 SMART PGNneu 359 422 - -
Bma06g01280 449 MobiDBLite consensus disorder prediction 275 307 - -
Bma06g01280 449 MobiDBLite consensus disorder prediction 206 247 - -
Bma06g01280 449 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 138 IPR000608 -
Bma06g01280 449 SUPERFAMILY UBA-like 131 200 IPR009060 GO:0005515
Bma06g01280 449 Pfam Ubiquitin-conjugating enzyme 1 112 IPR000608 -
Bma06g01280 449 CDD UBCc 1 93 IPR000608 -
Bma06g01280 449 SMART ubc_7 1 142 - -
Bma06g01280 449 Coils Coil 218 252 - -
Bma06g01280 449 Coils Coil 274 298 - -
Bma06g01280 449 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 147 188 IPR015940 -
Bma06g01280 449 Gene3D - 149 195 - -
Bma06g01280 449 Pfam PUB domain 357 426 IPR018997 -
Bma06g01280 449 SUPERFAMILY UBC-like 1 108 IPR016135 -
Bma06g01280 449 SUPERFAMILY PUG domain-like 342 445 IPR036339 -
Bma06g01280 449 Gene3D Ubiquitin Conjugating Enzyme 1 144 IPR016135 -
Bma06g01280 449 MobiDBLite consensus disorder prediction 275 335 - -
Bma06g01280 449 CDD UBA_PUB_plant 147 195 - -
Bma06g01280 449 PANTHER F13M7.16 PROTEIN 90 449 - -
Bma06g01280 449 Pfam UBA/TS-N domain 153 184 IPR015940 -
Bma06g01280 449 Gene3D - 338 439 - -
Bma06g01280 449 SMART uba_6 149 187 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01280 Bma-Chr6:49889016 Bma05g00850 Bma-Chr5:46045097 2.83E-17 dispersed
Bma02g01203 Bma-Chr2:54107817 Bma06g01280 Bma-Chr6:49889016 4.75E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01280 K24348 - jre:109003439 528.865