Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01282 ATGGCTTGCGAAACACTAAATTTGTGGACATTTTCAGGATTAGTGGGCGCGTTTCTTGATCTGGGTGTAGCCTACTTGTTACTCTGTGCATCTTCTCTTGCCTTCCTTGCATCAAAATTTCTTGGTTTATTTGGATTATATTTGCCATGTCCATGCGACTGCTCTTTCCTGAAAGCAAAAGGCATTCGATGCTGGAAAAGAGCATTAGTGGATCATTCATCAGAGAAAGTTACTTCTGTCCAATCCTCCGTGAAGGGAAAGTACCCATTTGACTTGTTATGGGACAGAGACCCGAGCTTTCGTTCGTGTTTCCAATTTACAGGAGAGAGAAATCACGAGGTTAGTCATGTTGAATTAGAGGGTGAGGGATCATCCAATGTAATCTATGAAAGGAGGGCTCGTCGTTTGGTTGATAGAGATGCACTGGAAATCCAGGAGCCAGATTTTGAGATGGAATGTCCTCGTGTAAGGGAAGAAGAAAGATGTGACTTTAAGGCGAAAGGGATTGAGAATAAGAGTCGGAGAAAAATTCTTCGTCGTCGGCATAAAGTTGTCTTTGGCGATGATAATGTTGAATCGGTTTTGTCAAATGATGTTTTACGCTTGGATGTAAGTGATGTTCCTCAACCTTTTACCGGCAGTCGTCTATCTGGGAACAAAGATGACAACGAAAGCTTCTTTTCTTCACAGCCCATGGATTTTTGCTTATTATTGAGTAATTATTCAATTTTAGATGGAAAGGAGGTGAATTCAGACAAAGAAAGGGCAGAGAACGATGAATATTCTGCTGAAGATTTAACCTACAATTTGCAAGGCCAGTTTGATTGTGATGGCACCGAGAAGAATTCAATCAGAAGGTTGAAAGAAGCACTTGAAGAAGAGCGTAAGGCTCGAAATGCTCTTCATCTTGAACTCGAGAAAGAGAGAAGTGCTGCTGCTTCTGCTGCAGACGAGGCCATGGCGATGATTTTACGTCTTCAAGAGGAGAAGGCCTCGGTAGAAATGGAAGCTAGGCAATACCGTAGGACGGTAGAAGAAAAAAATGTTTTCGATACAGAGGAAATGAACATTCTTAAAGAGATGTTATTAAGGAGAGAGATGGAACTGCATTTCTTGGAGAAGGAAGTTGAAGCTTACAGACTAACAATGTTTGAGAACGACGACGACGACGTAATTGTCGATATAAATCTGGAGGACTCCACACTCGAACGACAAACTGTTTCTTCATCACCCTTGAGGGAAGATTCGATGTCGATATCTAGGGAGATCAGGAAATCCAACGGTGAGAAGCATGGGGAAGATATCTTAACCCTGCAGGTGGATAAACTCAACGAGTCTAATGCTGAAGAACGTCCATTGCTGAATGTTAGTGATGAGACAAACTTTAAGGAGAGGGGAATGGTAATTGTGCCTGAGAATTCTGTTGTCTCGACGAAAGTGGAGCTGAGCTCGGTTGATTTGCATAATAAATCTGCACAAAGGGTTGCAGAAGAATCAATATTAAACAGCACAAATCAAGAGCATGAACTCAATCCAGCTAGATCTGTAATCAATACAATTTCTCTTTTTCATGATGTTCATGTCATTGATGAAAATGCTGGCGAAGTGCTTCCTATGGATGGGAGTCCATCTTTGTGCAGGTCGAAAACTGAAAGAGAAATTATGAGAAGCAGCTGGGATCTGACCAGTGTACTGCCGACAAAGGTTCGATCGAGTGAACAAAGACTAGTTTCTGATTTGCGGAGAAATTCCATGTCTGCTGTCGATTGTGAGAGACTAAAAATTGGGAATGAAGTCGGATTGCTTATGGAGAGGTTAAAGGTTATTCAAGAGGGAAGAGAGAAACTCAACTTCCCTATCGAACACAAGGAAACAGAGACGAATCTCGAGAGACACCAATCGACAGCTCTCCGAACGGCACAGCGTCGGGCCTCATCGCCTCCTAGGACCTCTAAGGTGCATAATCGAACTCAAATATTGTGTTCTCACACGCACATGTAG 2001 42.48 MACETLNLWTFSGLVGAFLDLGVAYLLLCASSLAFLASKFLGLFGLYLPCPCDCSFLKAKGIRCWKRALVDHSSEKVTSVQSSVKGKYPFDLLWDRDPSFRSCFQFTGERNHEVSHVELEGEGSSNVIYERRARRLVDRDALEIQEPDFEMECPRVREEERCDFKAKGIENKSRRKILRRRHKVVFGDDNVESVLSNDVLRLDVSDVPQPFTGSRLSGNKDDNESFFSSQPMDFCLLLSNYSILDGKEVNSDKERAENDEYSAEDLTYNLQGQFDCDGTEKNSIRRLKEALEEERKARNALHLELEKERSAAASAADEAMAMILRLQEEKASVEMEARQYRRTVEEKNVFDTEEMNILKEMLLRREMELHFLEKEVEAYRLTMFENDDDDVIVDINLEDSTLERQTVSSSPLREDSMSISREIRKSNGEKHGEDILTLQVDKLNESNAEERPLLNVSDETNFKERGMVIVPENSVVSTKVELSSVDLHNKSAQRVAEESILNSTNQEHELNPARSVINTISLFHDVHVIDENAGEVLPMDGSPSLCRSKTEREIMRSSWDLTSVLPTKVRSSEQRLVSDLRRNSMSAVDCERLKIGNEVGLLMERLKVIQEGREKLNFPIEHKETETNLERHQSTALRTAQRRASSPPRTSKVHNRTQILCSHTHM 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49905907 49907980 - Bma024390.1 Bma06g01282 84784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01282 666 Coils Coil 316 343 - -
Bma06g01282 666 Coils Coil 284 311 - -
Bma06g01282 666 MobiDBLite consensus disorder prediction 632 655 - -
Bma06g01282 666 Pfam Zein-binding 286 376 IPR007656 -
Bma06g01282 666 ProSiteProfiles GTD-binding domain profile. 282 380 IPR007656 -
Bma06g01282 666 PANTHER BNAANNG28530D PROTEIN 3 654 - -
Bma06g01282 666 MobiDBLite consensus disorder prediction 624 655 - -
Bma06g01282 666 PANTHER BNAANNG28530D PROTEIN 3 654 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01282 - - - mcha:111016085 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01282 Bma-Chr6:49905907 Bma09g00561 Bma-Chr9:42623425 2.81E-28 dispersed
Bma06g01282 Bma-Chr6:49905907 Bma14g01237 Bma-Chr14:19838744 3.29E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01282 Bma_Chr06 FPKM 0.216334 0.277419 0.259661 0.159373 1.380681 1.410559 1.473759 2.450607 2.034315 2.260073