Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01286 GAAAATCAAATGGGTGGTGAAGGAAACGTCTTAACTTTGAAACAAGTTTCGGAGCACAACACGCCCAAGGACTGTTGGCTAATCATCAATGGCAAAGTGTATGATGTTACCAAGTTCTTGGAAGACCATCCTGGTGGCGATGACGTTCTGTTATCCGCTACCGGAAAGGATGCAACTGATGATTTTGAAGATGTGGGTCACAGTGACAGTGCAAGAGACATGATGAACAAATACTATGTCGGTGAGATTGATTCCTCGACAATTCCGAAAAAAACAACTTATGTGCCTCCAAAACAGCCCTATTACAATCAGGACAAGACATCAGAGTTCATTGTCAAGCTCCTCCAATTCCTCGTCCCGCTCGCTATATTGGGTTTGGCCGTCGGAATTCGCTTCTACACGAAATCAAGCTGA 414 44.44 ENQMGGEGNVLTLKQVSEHNTPKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDSARDMMNKYYVGEIDSSTIPKKTTYVPPKQPYYNQDKTSEFIVKLLQFLVPLAILGLAVGIRFYTKSS 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49943859 49945878 + Bma024394.1 Bma06g01286 84788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01286 137 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 9 96 IPR036400 -
Bma06g01286 137 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 8 84 IPR001199 -
Bma06g01286 137 Pfam Cytochrome b5-like Heme/Steroid binding domain 12 83 IPR001199 -
Bma06g01286 137 PRINTS Cytochrome B5 signature 58 65 IPR001199 -
Bma06g01286 137 PRINTS Cytochrome B5 signature 33 43 IPR001199 -
Bma06g01286 137 PRINTS Cytochrome B5 signature 43 57 IPR001199 -
Bma06g01286 137 PRINTS Cytochrome B5 signature 71 83 IPR001199 -
Bma06g01286 137 PANTHER CYTOCHROME B5 4 135 - -
Bma06g01286 137 SMART Cyt_b5_2 11 84 IPR001199 -
Bma06g01286 137 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 39 46 IPR018506 GO:0020037
Bma06g01286 137 PANTHER BNAC04G43300D PROTEIN 4 135 - -
Bma06g01286 137 Gene3D - 3 89 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01286 K23490 CYB5; cytochrome b5 - qsu:112039863 255.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01207 Bma-Chr2:54131300 Bma06g01286 Bma-Chr6:49943859 1.80E-90 dispersed
Bma06g01286 Bma-Chr6:49943859 Bma14g02023 Bma-Chr14:43583012 1.21E-65 dispersed
Bma06g01286 Bma-Chr6:49943859 Bma06g01305 Bma-Chr6:50069410 2.22E-98 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
Bma14g02023 . 1 134 NADPH P450 reductases AT5G53560 82.1 4.8e-62 233.8
Bma06g01286 . 4 137 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma06g01305 . 1 134 NADPH P450 reductases AT5G53560 68.7 2.0e-52 201.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G53560 68.7 5.9e-52 200.3
Bma02g01115 . 1 136 NADPH P450 reductases AT5G53560 54.4 2.9e-38 154.8
Bma02g01207 . 1 134 NADPH P450 reductases AT5G48810 63.2 9.9e-50 193.0
Bma06g01286 . 4 137 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma06g01305 . 1 134 NADPH P450 reductases AT5G48810 64.0 1.7e-49 192.2
Bma14g02023 . 1 134 NADPH P450 reductases AT5G48810 61.8 6.0e-47 183.7
Bma02g01207 . 22 133 NADPH P450 reductases AT2G32720 82.1 9.5e-50 193.0
Bma06g01286 . 25 136 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma06g01305 . 22 133 NADPH P450 reductases AT2G32720 82.1 2.1e-49 191.8
Bma14g02023 . 22 133 NADPH P450 reductases AT2G32720 67.0 4.0e-40 161.0
Bma10g00255 BCT 2 281 NADPH P450 reductases AT5G17770 81.8 8.4e-133 469.9
Bma04g01430 BCT 2 281 NADPH P450 reductases AT5G17770 81.1 3.2e-132 468.0
Bma07g00307 . 7 302 NADPH P450 reductases AT5G17770 68.6 3.0e-114 408.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01286 Bma_Chr06 FPKM 8.205787 10.257492 9.352357 10.994938 15.161041 12.865362 16.291895 8.73807 7.693165 7.896608