Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01294 ATGATTGTAGTCGTTGCTCTTCTTTTTTTTTTTCTCCTTCAGGGGCGGGTTAGTACTGAAGAAGTTTTTGCTTTGTCCAACACAGATTTAATCCCTGGGAAATATGAAGGTGGACTGAAGTTGTGGGAAGGGTCATTAGATCTTGTCAAAGCCTTGCGTTCAGAGATTGGAGATGGACATTTATCATTTTCTGGAAAGCAAGTCTTAGAGGTGAGATCTCATGTTTTTCTCTTGATGGGTACTCAGCTTGGATGTGGTCATGGACTTCCTGGTATCTTTGCTTGCCTTGAGGGTGCAGCTGCCGTTCATTTCCAGGATTTTAACTGCGAAGTCTTAAAATGTCTAACCATTCCCAATGTAAATGCAAATATATCTAGCAAGTTTAAATCCTTGTCAACAAATGAGACAGAATGTGACATTGGATCAGACATTCGTTTCTTTGCTGGTGACTGGAGCGAAATGGATAAACTTCTTCCACATGTTTCAAGCACAGGGAAGGAGCTAAATGGAAATTTCAGGCACAGTCAAGTTGGGGGTTATGACATTATTATGATGGCAGAAACTGTTTATTCTATCACTGCTCTTCAAAATCTGTATGAACTTATAAAGAAGTGTCTTAGCCATCCTCATGGGGTCGTGTATATGGCTGCGAAGAAGCACTATTTTGGAGTAGGCGGAGGAACACGAAGATTCCTTTCTTTGGTGGAAAAGGATGGTGTAATGGCTAGCAGCATGATTACTGAAGTTGCTGATGGTTCTTCTAATGTTCGAGAGGTGTGGAAGCTTCAATTTAAGTTAACTTAG 804 40.8 MIVVVALLFFFLLQGRVSTEEVFALSNTDLIPGKYEGGLKLWEGSLDLVKALRSEIGDGHLSFSGKQVLEVRSHVFLLMGTQLGCGHGLPGIFACLEGAAAVHFQDFNCEVLKCLTIPNVNANISSKFKSLSTNETECDIGSDIRFFAGDWSEMDKLLPHVSSTGKELNGNFRHSQVGGYDIIMMAETVYSITALQNLYELIKKCLSHPHGVVYMAAKKHYFGVGGGTRRFLSLVEKDGVMASSMITEVADGSSNVREVWKLQFKLT 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 49994661 49996695 - Bma024402.1 Bma06g01294 84796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01294 267 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 223 IPR029063 -
Bma06g01294 267 Gene3D Vaccinia Virus protein VP39 17 252 IPR029063 -
Bma06g01294 267 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 12 256 IPR019410 -
Bma06g01294 267 PANTHER HISTIDINE PROTEIN METHYLTRANSFERASE 1 HOMOLOG-RELATED 12 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01294 - - - qlo:115950649 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01294 Bma-Chr6:49994661 Bma06g01419 Bma-Chr6:50935779 5.10E-58 dispersed
Bma06g01294 Bma-Chr6:49994661 Bma06g01395 Bma-Chr6:50703826 1.51E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1021 . . . . . . . . . . . Cma14g01544 . . . . Cpe03g01290 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00751 . Bma06g01294 . . Cmo14g01579 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006894 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01294 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0