Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01317 CAGTCTTCTATGGCGGCGAGAACCGGGAGGGAGAAACAACGGTACGAGGATGATTTCAGGCTCGTCGCAGGATGCATACCGTACAAGATTGAGGGGAAGATTAAACGGGATAATCTGCTTGTTCTCATGATTTCTGCCCCGAATAAAGATTATCTCGTCTTTCCAAAGGGTGGCTGGGAAGACGACGAGACCATAGCCGAAGCAGCTTCCCGGGAGGCCTTCGAGGAAGCCGGCGTCAAAGGAATACTTTCCGAAACTCCACTTGGGGTTTGGGAGTTTAGAAGCAAGAGCAAGGAGAAAATGAGCAGTTCCGGCTCCGATGGAAGTTGCAGAGGTTATATGTTTGGAATGGAGGTGACCCAAGAGCTCGAATTCTGGCCTGAACGCTCTATTTATCAAAGAAAATGGGTGAACGCAGAGGAGGCATTCAGATTCTGCAGGTACGACTGGATGAGAGAAGCACTTCACAGACTTCTGGCTTCTCTTTCTGATTCAAACGATATTGACTTGGCTTTATGA 519 48.75 QSSMAARTGREKQRYEDDFRLVAGCIPYKIEGKIKRDNLLVLMISAPNKDYLVFPKGGWEDDETIAEAASREAFEEAGVKGILSETPLGVWEFRSKSKEKMSSSGSDGSCRGYMFGMEVTQELEFWPERSIYQRKWVNAEEAFRFCRYDWMREALHRLLASLSDSNDIDLAL 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50175929 50176940 + Bma024426.1 Bma06g01317 84819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01317 172 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 2 165 - -
Bma06g01317 172 PANTHER NUDIX HYDROLASE 12, MITOCHONDRIAL 2 165 - -
Bma06g01317 172 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 4 161 - -
Bma06g01317 172 CDD Nudix_Hydrolase_9 21 152 - -
Bma06g01317 172 ProSitePatterns Nudix box signature. 57 78 IPR020084 GO:0016787
Bma06g01317 172 Pfam NUDIX domain 21 157 IPR000086 -
Bma06g01317 172 SUPERFAMILY Nudix 13 161 IPR015797 -
Bma06g01317 172 ProSiteProfiles Nudix hydrolase domain profile. 18 159 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01317 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - fve:101311853 220.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00421 Bma-Chr3:3215532 Bma06g01317 Bma-Chr6:50175929 1.90E-41 dispersed
Bma06g01317 Bma-Chr6:50175929 Bma08g00106 Bma-Chr8:1267007 7.24E-43 dispersed
Bma06g01317 Bma-Chr6:50175929 Bma08g00871 Bma-Chr8:46891330 4.14E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1371 . . . Bda11g00366 Bpe13g00839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00366 . . . Bma06g01317 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004911 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 4 4 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01317 Bma_Chr06 FPKM 10.961071 19.462685 5.973284 6.256832 11.821824 5.767402 9.716706 6.030485 4.040596 7.031416