Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01322 ATGAGTGGTTTTTGTTGCTTCTACTGTGGAGATGAATACGAAGAGTACTCGCTTCCTAGTAACCTCATATATAGATACTGCATCTGCCTAAGATTTTACTTCCACCAGCTGTTCAACGGGTATAGCACAGCAGTTCCAAGGATTGAAGGGCGTTCTATGTCTGTGCCAATACAAGGCACTACTTCTTTGGCAGCTACTGGGTTCGACTCAGAATTAACTGACAATTCTCTGAATGAAAATCATCTGTCATTGATCAGACAATTACCTTTTACTGCTGAGCAAAGATACTCTCGTTTGCCGCGTGATGGGTTGGTTTCACGACGAGACAAGTTAATGTCACATTTCCAAGATGATTCACAACAACACAGAAGGAACGTCAGCGGTTCTGGTGCTGAAGCAATGGAATCTGGGAAGAAATATACACTCTCTGAGTCCTCAGAGAATGCTTTGAACCGAAATATAGAATACGGAGTACTCTATGTGCAACCATCTTCAGAAGATGAAGATGTCTGCCCCACATGTCTCGATGAATATACTCTAGACAATCCAAAAATTATGACCAGATGCTCCCACCATTTTCATCTTGGTTGTATATACGAGTGGTTGGAAAGAAGTGAAAGTTGTCCCATCTGTGGCAAGGTATGCACATATTAG 654 42.05 MSGFCCFYCGDEYEEYSLPSNLIYRYCICLRFYFHQLFNGYSTAVPRIEGRSMSVPIQGTTSLAATGFDSELTDNSLNENHLSLIRQLPFTAEQRYSRLPRDGLVSRRDKLMSHFQDDSQQHRRNVSGSGAEAMESGKKYTLSESSENALNRNIEYGVLYVQPSSEDEDVCPTCLDEYTLDNPKIMTRCSHHFHLGCIYEWLERSESCPICGKVCTY 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50195810 50197753 + Bma024431.1 Bma06g01322 84824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01322 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 216 IPR013083 -
Bma06g01322 217 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 214 - -
Bma06g01322 217 PANTHER OS01G0926200 PROTEIN 1 214 - -
Bma06g01322 217 MobiDBLite consensus disorder prediction 115 144 - -
Bma06g01322 217 Pfam RING-H2 zinc finger domain 168 211 IPR024766 GO:0008270
Bma06g01322 217 SMART ring_2 171 211 IPR001841 -
Bma06g01322 217 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Bma06g01322 217 SUPERFAMILY RING/U-box 159 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01322 - - - qsu:111985043 291.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01322 Bma-Chr6:50195810 Bma14g01059 Bma-Chr14:12803159 4.66E-33 dispersed
Bma06g01322 Bma-Chr6:50195810 Bma01g01095 Bma-Chr1:11534859 2.56E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1365 . . . Bda11g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00370 Bpe14g00823 . . Bma06g01322 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018059 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5