Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01325 ATAGCTATGGGGGATTGCAAGGTGAACGACAGGGATATGAAGAAGGAAGAGGAGGAGGAGGATTTTGAAGAGGCGGAGGAAGATTTCGAGGACTGTGAGGAGGAGGATGGATTTCCGGAAGAGGAATATTTGGAGAGCGATGAGGTTGAGAAGAGCAGAATAGCCTTGATGAGAGCCTATGTTGAACGAGAGGATCCGTCTGCTAAGGAAGTAGATGACTTTATGATACGGAGATTTCTCAGGGCTCGTGATCTAGACGTTGAGAAGGCTTCAACAATGTTTCTGAATTATCTATGCTGGAAGCGGAAATGGCTTTCTGAGGGTTTTATATCTGCATCAGAGATTTCAGAGGAAATCTCCCATAACAAGTTGTTTATGCAAGGCCTGGATAAGAAGGAACATCCCATTGTAGTGGTCTTTGGTGCTAGGCACAAACAAGGAAATATAGAAGAGTTTAAGAGATTTGTTGTTTATAGTCTTGAAAAAATATGTGCCAAAATGCCCAGAGGGCTGGAAAAGTTTGTGTGCATTGCTGATCTTCAAGGATGGGGCTATTCCAATTGTGACATTCGAGGATACAGAGCAGCTCTGTCGATCTTGCAGGATTGCTACCCAGAGAGGCTAGCCAAGTTGTATATTATCCACGTACCTTATATATTCATGACAAAAAAGAAGATAAATTTTGTTGAAAACAAGAAGCTCGGATCCACGCTGCTTAATGACATTGATGAGAGTCAGCTCCCTTGTCAATTTGGAGGCAAAATGGAGTTGGTTCCGATTCAAAGCAGCTAA 792 42.8 IAMGDCKVNDRDMKKEEEEEDFEEAEEDFEDCEEEDGFPEEEYLESDEVEKSRIALMRAYVEREDPSAKEVDDFMIRRFLRARDLDVEKASTMFLNYLCWKRKWLSEGFISASEISEEISHNKLFMQGLDKKEHPIVVVFGARHKQGNIEEFKRFVVYSLEKICAKMPRGLEKFVCIADLQGWGYSNCDIRGYRAALSILQDCYPERLAKLYIIHVPYIFMTKKKINFVENKKLGSTLLNDIDESQLPCQFGGKMELVPIQSS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50217117 50218921 + Bma024434.1 Bma06g01325 84827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01325 263 SMART sec14_4 118 256 IPR001251 -
Bma06g01325 263 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 112 259 IPR001251 -
Bma06g01325 263 Coils Coil 8 35 - -
Bma06g01325 263 MobiDBLite consensus disorder prediction 16 44 - -
Bma06g01325 263 SUPERFAMILY CRAL/TRIO N-terminal domain 34 104 IPR036273 -
Bma06g01325 263 SMART CRAL_TRIO_N_2 72 97 IPR011074 -
Bma06g01325 263 Pfam CRAL/TRIO domain 121 253 IPR001251 -
Bma06g01325 263 CDD SEC14 125 254 IPR001251 -
Bma06g01325 263 Gene3D - 42 261 IPR036865 -
Bma06g01325 263 PANTHER OS03G0850700 PROTEIN 31 262 - -
Bma06g01325 263 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 31 262 - -
Bma06g01325 263 SUPERFAMILY CRAL/TRIO domain 114 256 IPR036865 -
Bma06g01325 263 MobiDBLite consensus disorder prediction 1 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01325 - - - qsu:111985042 321.242
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02649 Bma-Chr1:83985730 Bma06g01325 Bma-Chr6:50217117 1.28E-14 dispersed
Bma06g01325 Bma-Chr6:50217117 Bma15g00025 Bma-Chr15:276597 4.70E-25 dispersed
Bma06g01552 Bma-Chr6:51843163 Bma06g01325 Bma-Chr6:50217117 7.20E-09 dispersed
Bma06g01630 Bma-Chr6:52419574 Bma06g01325 Bma-Chr6:50217117 2.54E-09 dispersed
Bma06g01325 Bma-Chr6:50217117 Bma05g01378 Bma-Chr5:53205069 3.29E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1356 . . . . Bpe13g00832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00211 . . . Bpe14g00819 . . Bma06g01325 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007871 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01325 Bma_Chr06 FPKM 1.06117 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0