Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01326 ATGCTTTCAGAGCTGCCTGCTACAGTGGCAGCTATTAAGAACCCTACCTCTAAGATAGTTTATGACGAATACAATCACGAGCGTTTTCCACCTGGTGACCCCAGCAAGCGTGCTTTTGCGTATTTTGTTTTGACTGGAGGCAGGTTTGTGTATGCGTCTGTGATCCGGCTTCTGATCCTTAAGTTTGTTGTGAGCATGTCAGCTAGCAAAGATGTGCTTGCCCTTGCTTCCCTCGAGGTGGACCTATCCAGTATCGAGTCAGGTTCGACTGTCACGGTCAAGTGGAGAGGAAAGCCAGTCTTCATTAGGCGAAGAACTGAAGATGACATTAAGTTGGCTAACAGTGTAGATGTTGGGACTCTTCGTGACCCACAGGAGGATTCAGAGAGAGTGAAGGATCCCGAATGGCTAGTTGTTGTTGGGGTGTGCACTCACTTGGGCTGCATCCCCTTGCCAAATGCTGGTGACTTTGGTGGTTGGTTTTGCCCGTGCCATGGTTCGCACTATGACATTTCTGGCAGGATTCGGAAGGGCCCTGCACCGTACAATCTTGAGGTGCCCACTTACAGCTTCTTGAGTGAAAATAAGTTGCTTGTTGGGTGA 603 49.25 MLSELPATVAAIKNPTSKIVYDEYNHERFPPGDPSKRAFAYFVLTGGRFVYASVIRLLILKFVVSMSASKDVLALASLEVDLSSIESGSTVTVKWRGKPVFIRRRTEDDIKLANSVDVGTLRDPQEDSERVKDPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLSENKLLVG 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50219671 50220273 - Bma024435.1 Bma06g01326 84828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01326 200 PRINTS Rieske 2Fe-2S subunit signature 138 149 IPR005805 GO:0016020|GO:0051537
Bma06g01326 200 PRINTS Rieske 2Fe-2S subunit signature 160 172 IPR005805 GO:0016020|GO:0051537
Bma06g01326 200 PRINTS Rieske 2Fe-2S subunit signature 172 184 IPR005805 GO:0016020|GO:0051537
Bma06g01326 200 SUPERFAMILY ISP domain 61 199 IPR036922 GO:0051537
Bma06g01326 200 Pfam Ubiquinol cytochrome reductase transmembrane region 33 71 IPR004192 GO:0008121
Bma06g01326 200 Gene3D - 69 200 IPR036922 GO:0051537
Bma06g01326 200 Pfam Rieske [2Fe-2S] domain 83 186 IPR017941 GO:0051537
Bma06g01326 200 CDD Rieske_cytochrome_bc1 77 200 - -
Bma06g01326 200 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 200 - -
Bma06g01326 200 SUPERFAMILY ISP transmembrane anchor 17 73 - -
Bma06g01326 200 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 130 198 IPR017941 GO:0051537
Bma06g01326 200 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 1 200 IPR014349 GO:0051537
Bma06g01326 200 TIGRFAM Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 49 200 IPR006317 GO:0008121
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01326 K00411 UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] - qsu:111985034 391.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01326 Bma-Chr6:50219671 Bma12g00766 Bma-Chr12:34744150 8.43E-08 dispersed
Bma02g00642 Bma-Chr2:16973389 Bma06g01326 Bma-Chr6:50219671 2.93E-138 transposed
Bma02g01229 Bma-Chr2:54309300 Bma06g01326 Bma-Chr6:50219671 5.90E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1355 . . . . Bpe13g00831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00210 . . . Bpe14g00818 . . Bma06g01326 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002683 1 2 2 4 3 2 0 2 2 0 1 2 3 2 2 3 2 3 2 2 2 2 1 1 2 2 2 3 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01326 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.468024 0.457301