Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01327 ATGATGGCAATGTATGGTAGGTGTGGTGTGTTGAATGATGCACTCCAAATGTTTCAGAGAAGGATTGAAGATGTGGTTTCATGGAATTCAATTCTTGCTGCTTTTGTACAGAATGGTCAGTCAAAGGATGCCCTGAAACTCGCAGTGCAAATGGCAACTGCTTGTGTAAATAGACATGATGCTGTTACCCTTGTGACTATCCTCTCCGCTTGCGCATCAGTTGGGAGAGAAACGCAAGGTAAGCAAGTCCACGCATATGCTGTTCGAAGTGGATTGTTGGATGATGTATTTGTAGGGAATGCTGTAATTGATATGTGTGCTAAGTGCGGAAAAATGGATGATGCGAATAAGGTTTTCAAGAGGATGGTTAAAAAAGATGTTATTTCATGGAATTCAATGGTTACTGGGTATTCTCAGATAGGAATGTTTAATGACGCTCTGGCTTTGTTTGAGAAGATGAGGCAGGAGGAGATTGAGTTGAATGTTGTGACATGGAGCGCTGTGATTGCAGGTTATGCACAGAGTGGCCAAGGGTTAGATGCTCTAGATGTATTTAGGAAAATGCAGCTTAATGGGTCCGAGCCAAATGTTGTTACTTTCGTGTCTCTATTATCAAGTTGTGCTTCTATCGGAAGTTTACTTCATGGAAGAGAAACTCACTGTTATGCCTTGAAACATGTTCTTAACTCAAAGGAGAGTGATCCAGGGGATGATTTAATGCTTCTTAATGGTCTGATTGACATGTATGCTAAATGCAAAAGTTTTCGAGTTGCACGAATGATTTTTGACTCCACAATTCTAGACGATAGGAATGTTGTGACTTGGACTACCATGATTGGTGGATATGCTCAACACGGTGAGGCTAATAGTGCGCTCGAACTTTTCTCTGAGATGTTCAAACATGATACTTCCATAAAACCAAATGCCTTTACCATATGTTGTTCCTTGATGGCTTGTGCTCGTTTGGCTTCATTGAGGATTGGTAAACAAATTCATGCATATGTTTACCGTGATCAAGATGAGTCTGAAGTTTTATACGTATGCAACTGTCTAATTGATATGTATTCCAAGTCTGGGGACGTTGACACTGCAAGAGTTGTGTTTGATACTATGAAGCAACGCAATACTGTTTCTTGGACCTCACTAATGACAGGTTATGCCATGCATGGCCGAGGTGAAGAGGCCATTCAAGTTTTCGACGAGATGAGGAGAGTGGGCTTGGTGGTTGATGATGTTACTTTTGTTGTCGTTCTTTATGCATGTAGCCATGCCGGAATGGTGGATCAGGGAATGAAGTACTTCAATCACATGCAGCAAGATTTTGGAGTAATACCTGCCGTCGAGCATTATGCTTGCATGGTCGATCTGTTGGGTCGAGCCGGTCGACTAAATGAAGCTATGGAGCTGATTCGAGGGATGCCTATGAAGCCTACTACAATTGTATGGGTAGCATTGCTTAGTTCTAGCAGAACTCATGCTAATGTGGATCTTGGGGAATATGCTGCAAAAGAATTGGCTGAGTTAGAATCGGAAAATGATGGGTCATTGACTTTGCTTTCCAACTTATATGCAAATGCTAGACGATGGAAAGATGTGGCAAGAATTCGATTGTTAATGAGGGATAATGGGATTAGAAAGAGGCCTGGTTGTAGTTGGGTACAAGGAAAACATGGCATTGCAACTTTCTTTGTCGGTGATAGGACGCATCCAATGTCTCAGGATATATACAAGATATTAGCTGAGTTGATTCGGCGAATCAAAGACAAGGGATATGTTCCTCAAACGAGCTATGCCCTTCATGATGTAGATCATTTTGTCCTTGAGGAAAACATGTTGGAAGTTGACTGCCCCTGTGTCACACCGGAGATTGTTCTTAAGGCTTCTGGTCATGTCGATAAATTCACGGATCTCATGGTTAAAGATGAGAAAACCGGGACCTGTTTCCGCGCTGATCACTTAATCAAGGACTTTTGTAATGAGAAACTTCAGAAAGACCTCACCATCACTTCCGAGAAAGCAGCAGAGCTAAAACATGTACTTGCTGTTTTGGATGACCTCTCTGCTGAAGATTTGGGCGCAAAGATTAAGGAGTATGGCATTACTGCCCCAGACACACAGAATCCATTGTCTGATCCTTATCCATTTAACTTAATGTTTCAAACATCAATTGGCCCATCTGGTTTGAGCCCTGGATACATGCGTCCAGAAACTGCGCAGGGTATATTTGTTAACTTTAAAGATTTGTACTATTACAATGGGAACAAGCTTCCCTTTGCAGCGGCTCAAATTGGTCAAGCTTTTAGGAATGAGATATCTCCTCGTCAAGGTCTTCTTAGAGTCCGTGAGTTCACATTAGCAGAGATTGAGCACTTTGTTGATCCAGGAATTGTGAACAATGAAACTCTTGGCTTTTTCATTGGGAGAGTATATTTATTCCTAACTCAACTTGGTATAGACAAAGATCGCTTACGGGAGAAAAGTGGTGTTCTTTTAGTGGCGCAAGAAAAATTTTCAGAACCCAGAGAAGTGGAGAAATTGATCATAGCTCCGGTCAAGAAAGAACTAGGCCTTGCGTTTAAGGGTAACCAGAAGAATGTTGTTGAGGCTTTAGAGGCTATGAACGAAGAAGAAGCCTTTAAAATGAAGGCAACTCTAGAATCAGATGGGGAGGTGGAGTTTTACGTCTGTACCCTTGAGAAAAAAGTATCAATAAAAAAAAACATGGTTTTGATTTCAAAGGATAAAAAAAAGGAACATCAAAGAGTTTTCACTCCCTCTGTAATTGAACCATCATTTGGTATTGGAAGGATAATTTATTGCCTCTTCGAACATACTTACTACATGAGGCCTAGTAAAGATGGCGAAGAACAGCTGAACGTATTTCGGTTTCCACCTCTCGTTGCACCAATTAAGTGCACAGTTTTCCCCCTGGTTCAGAATCAACAGTATGAGGACGTTGCTAAAGTTATTTCCAAGTCGTTGACTCTTGCTGGTATCTCGCATAAGATTGACGTTACAGGCACATCAATCGGTAAACGATACGCCAGAACTGATGAGCTTGGTGTACCCTTTGCCATAACGGTAGATTCTACGGAATCGGTTACAATCCGGGAGAGGGATAGCAAAGATCAAATCCGGGTTACCGTGGGAGAGGCAGCATCTTTTGTGAAAAACGTGATGGATGGATATACGACATGGGATGAAGTGTGGGCCTCGAAGAAGATTGAATTCAAGTAG 3237 41.8 MMAMYGRCGVLNDALQMFQRRIEDVVSWNSILAAFVQNGQSKDALKLAVQMATACVNRHDAVTLVTILSACASVGRETQGKQVHAYAVRSGLLDDVFVGNAVIDMCAKCGKMDDANKVFKRMVKKDVISWNSMVTGYSQIGMFNDALALFEKMRQEEIELNVVTWSAVIAGYAQSGQGLDALDVFRKMQLNGSEPNVVTFVSLLSSCASIGSLLHGRETHCYALKHVLNSKESDPGDDLMLLNGLIDMYAKCKSFRVARMIFDSTILDDRNVVTWTTMIGGYAQHGEANSALELFSEMFKHDTSIKPNAFTICCSLMACARLASLRIGKQIHAYVYRDQDESEVLYVCNCLIDMYSKSGDVDTARVVFDTMKQRNTVSWTSLMTGYAMHGRGEEAIQVFDEMRRVGLVVDDVTFVVVLYACSHAGMVDQGMKYFNHMQQDFGVIPAVEHYACMVDLLGRAGRLNEAMELIRGMPMKPTTIVWVALLSSSRTHANVDLGEYAAKELAELESENDGSLTLLSNLYANARRWKDVARIRLLMRDNGIRKRPGCSWVQGKHGIATFFVGDRTHPMSQDIYKILAELIRRIKDKGYVPQTSYALHDVDHFVLEENMLEVDCPCVTPEIVLKASGHVDKFTDLMVKDEKTGTCFRADHLIKDFCNEKLQKDLTITSEKAAELKHVLAVLDDLSAEDLGAKIKEYGITAPDTQNPLSDPYPFNLMFQTSIGPSGLSPGYMRPETAQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPGIVNNETLGFFIGRVYLFLTQLGIDKDRLREKSGVLLVAQEKFSEPREVEKLIIAPVKKELGLAFKGNQKNVVEALEAMNEEEAFKMKATLESDGEVEFYVCTLEKKVSIKKNMVLISKDKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHTYYMRPSKDGEEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKVISKSLTLAGISHKIDVTGTSIGKRYARTDELGVPFAITVDSTESVTIRERDSKDQIRVTVGEAASFVKNVMDGYTTWDEVWASKKIEFK 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50223038 50231973 - Bma024436.1 Bma06g01327 84829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01327 1078 SUPERFAMILY Class II aaRS and biotin synthetases 603 974 IPR045864 -
Bma06g01327 1078 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 825 1069 IPR027031 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 346 375 IPR002885 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 100 127 IPR002885 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 273 305 IPR002885 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 412 445 IPR002885 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 163 197 IPR002885 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 128 162 IPR002885 -
Bma06g01327 1078 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Bma06g01327 1078 Gene3D Bira Bifunctional Protein; Domain 2 597 943 IPR045864 -
Bma06g01327 1078 Gene3D - 637 712 - -
Bma06g01327 1078 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 795 824 IPR027031 -
Bma06g01327 1078 Pfam E motif 492 554 IPR046848 -
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 24 58 IPR002885 -
Bma06g01327 1078 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 795 824 - -
Bma06g01327 1078 Gene3D Tetratricopeptide repeat domain 219 336 IPR011990 GO:0005515
Bma06g01327 1078 Gene3D Tetratricopeptide repeat domain 83 218 IPR011990 GO:0005515
Bma06g01327 1078 Gene3D Tetratricopeptide repeat domain 1 82 IPR011990 GO:0005515
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Bma06g01327 1078 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 695 950 IPR006195 -
Bma06g01327 1078 Gene3D - 969 1077 IPR036621 -
Bma06g01327 1078 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 825 1069 - -
Bma06g01327 1078 PANTHER GLYCINE--TRNA LIGASE 1, MITOCHONDRIAL 603 794 - -
Bma06g01327 1078 Pfam E+ motif 559 586 IPR046849 -
Bma06g01327 1078 PANTHER GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 603 794 IPR027031 -
Bma06g01327 1078 CDD GlyRS_anticodon 941 1057 - -
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Bma06g01327 1078 SUPERFAMILY Class II aaRS ABD-related 959 1071 - -
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 374 IPR002885 -
Bma06g01327 1078 Gene3D Tetratricopeptide repeat domain 347 561 IPR011990 GO:0005515
Bma06g01327 1078 Pfam PPR repeat family 270 320 IPR002885 -
Bma06g01327 1078 Pfam PPR repeat family 161 208 IPR002885 -
Bma06g01327 1078 Pfam PPR repeat family 374 422 IPR002885 -
Bma06g01327 1078 PRINTS Glycyl-tRNA synthetase signature 732 749 - -
Bma06g01327 1078 PRINTS Glycyl-tRNA synthetase signature 1010 1029 - -
Bma06g01327 1078 PRINTS Glycyl-tRNA synthetase signature 713 725 - -
Bma06g01327 1078 PRINTS Glycyl-tRNA synthetase signature 925 937 - -
Bma06g01327 1078 PRINTS Glycyl-tRNA synthetase signature 764 781 - -
Bma06g01327 1078 PRINTS Glycyl-tRNA synthetase signature 781 791 - -
Bma06g01327 1078 Pfam PPR repeat 128 156 IPR002885 -
Bma06g01327 1078 Pfam PPR repeat 450 474 IPR002885 -
Bma06g01327 1078 Pfam PPR repeat 100 126 IPR002885 -
Bma06g01327 1078 Pfam PPR repeat 26 51 IPR002885 -
Bma06g01327 1078 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 732 943 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma06g01327 1078 Pfam Anticodon binding domain 971 1058 IPR004154 -
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 125 IPR002885 -
Bma06g01327 1078 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01327 - - - qlo:115986386 884.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01327 Bma-Chr6:50223038 Bma11g00471 Bma-Chr11:5726886 6.18E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1354 . . . . Bpe13g00830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00817 . . Bma06g01327 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003505 1 2 2 1 2 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1 1 1 2 0 2 1 2 47