Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01328 ATGCATTTTGCTAAGCTCGATGATTCTCCTATGTTCCGCAAGCAGATACAAAGCTTGGAGGAGAGTGCTGAATCCTTAAGGGAAAGAAGCTTAAAGTTTTACAAAGGATGTCGAAAATACACTGAAGGGCTTGGAGAGTTTTATGATGGAGACATTGCCTTTGCCAGTGCCCTAGAAGCCTTTGGTGGAGGACATAATGATCCCATAAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTTACAATTGCACTAAGGGAAATCGGGACATACAAGGAAGTCCTTCGGTCCCAGGTGGAGCATATGTTAAATGACAGATTGCTACACTTCGTAAATATTGATTTGCTCGAGGTGAAGGAAGCAAGGAAACAATTTGATAAAGCTAGCCTTCTTTATGACCAGGCTCGCGAGAAGTTTTTATCTCTTAGGAAGGGTACAAAAAATGACATAGCTGCTCTTCTGGAAGAGGAACTTCACAGTGCAAGATCTTCCTTCGAGCAAGCGCGATTTAATTTGGTAACCGCACTTTCTAATGTTGAAGCCAAAAAAAGGTTTGAATTTTTGGAAGCAGTGAGTGGGACGATGGATGCACATCTCAGATACTTCAAACAGGGGTATGAACTGTTACATCAAATGGAGCCATACATTAACCAGGTGTTAACTTATGCTCAACAGTCACGTGAAAGATCCAACTATGAGCAAGCAGCTCTCAATGAAAGGATGCAAGAGTACAAAAGGCAGGTTGATCGAGAAAGTAGGTGGTCTTCCAATGGCTCTAATGGATCTCCAAATGGAGATGGTGTACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAGGCGGTAATGCAATCTGCCACGAAGGGAAAGGTTCAAACCATTCGACAAGGATATCTCTCAAAACGGTCGTCAAACTTGAGGGGTGACTGGAAAAGAAGATTTTTTGTTCTTGATAGCCGTGGAATGTTGTACTATTATCGAAAGCAGTGCATTAAATCATCTGGCTCCTCCGGTCAGCTATCCAATCAGAGGAATAGTTCTGAGATTGGCTCAGGACTGCTCAGCCGCTGGCTTTCTTCCCATTATCATGGTGGAGTACATGATGAGAAATCCGTCGCACATTACACCGTGAACCTGCTGACATCAACAATCAAAGTTGATGCCGACCAATCAGACCTTAGGTTTTGTTTCAGGATCATTTCACCAACAAAAAATTACACTCTGCAGGCAGAGAGTGCGATGGATCAAATGGATTGGATTGAGAAGATAACAGGAGTTATTGCTTCTTTACTTAGTTCTCAGGCTCCTGAGAGGTGTTTGTCAGCTAGTCCAATGGCAAGTGGTCATGATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCTGACTTTGATCAGACTACAATTGAAGAATTTACAACTGAGAGGAGCCTATCTTCTTCTCACCACGACCGCCCATCCAGGAATTTGCTACAGCAACGGTCCTGTGTAAAAATTGAGAAGCCAATTGATATACTGAGAAAAGTTTGTGGCAATGATAAATGTGCTGATTGTGGTGCCGCCGAACCAGATTGGGCATCTTTGAACCTAGGAGTTCTTGTTTGCATTGAATGCTCTGGTGTTCATCGAAATCTTGGTGTACACATATCTAAGGTAAGGTCCCTAACCTTGGATGTTAAAGTGTGGGAGCCTTCTGTCATCAGTTTGTTTCAGTCTCTAGGCAATGCATTTGCCAACTCTGTGTGGGAGGAGTTATTGCAATCGAGAAGTGCTTTTCAGGTTGATCTTGTCTCCACAGGGTTTTACAAATCTGATAAACAGCAGTTGCTTTTCATCAACAAACCTAATCATTCTGATTCTATATCAATAAAGGAGAAGTTCATCCATGGAAAGGTTATTTTTTTTTTACCTCAGTATGCAGAAAAGCTTTTTGTTCGTAAGCCAAAAGATAATCAATATCCGCATGTAATTGCGCTACAAATGTGGGAGGGTGTACGCTCTAATGACAAGAAAGCTGTTTATCGTCACATTGTTAACTCCGAGACAGATTTAAATACTGTTTATGACCATGCTTCATGGGGGTCTCAATCTCTAGCCAAAGTGATGCTATTGCAAGAGCAAAGTGGCCTACAGTACAGCTCTTGTTATACGCCTGCCGAAGCAATTGAAAGGTCTTCAACGAGCTCTTTGAATTTAGGGGGTACTAGTGAAAGTCAGAGTATAGACGATCTAGATGGGTGCACCCTCTTGCACCTTGCCTGTGAAACCTCTGACATTGGGATGCTTGAACTTCTACTGCAGTATGGTGCAAATATAAATGCTACTGACTCAAGAGGTCAAATGCCACTTCATTGGTGTATCTGTAAGGGCAAGACTACATTCGCAAAGTTTCTACTGACAAGGGGAGCTGACCCACAAGCTGCTGATGGTGAGGGTAGAACCCTTTTTCAGCTTGCAATGGAGTCGAACTGTAATGATAGGGAGATACTTGCTCTTTTATCAGACTCAAACGGGTGA 2517 42.55 MHFAKLDDSPMFRKQIQSLEESAESLRERSLKFYKGCRKYTEGLGEFYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHFVNIDLLEVKEARKQFDKASLLYDQAREKFLSLRKGTKNDIAALLEEELHSARSSFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGVQAIGRSSHKMIEAVMQSATKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCIKSSGSSGQLSNQRNSSEIGSGLLSRWLSSHYHGGVHDEKSVAHYTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESAMDQMDWIEKITGVIASLLSSQAPERCLSASPMASGHDRSASESSSFESSDFDQTTIEEFTTERSLSSSHHDRPSRNLLQQRSCVKIEKPIDILRKVCGNDKCADCGAAEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQVDLVSTGFYKSDKQQLLFINKPNHSDSISIKEKFIHGKVIFFLPQYAEKLFVRKPKDNQYPHVIALQMWEGVRSNDKKAVYRHIVNSETDLNTVYDHASWGSQSLAKVMLLQEQSGLQYSSCYTPAEAIERSSTSSLNLGGTSESQSIDDLDGCTLLHLACETSDIGMLELLLQYGANINATDSRGQMPLHWCICKGKTTFAKFLLTRGADPQAADGEGRTLFQLAMESNCNDREILALLSDSNG 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50248891 50260398 + Bma024439.1 Bma06g01328 84830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01328 838 ProSiteProfiles Ankyrin repeat region circular profile. 745 776 - -
Bma06g01328 838 SUPERFAMILY PH domain-like 235 427 - -
Bma06g01328 838 SUPERFAMILY Ankyrin repeat 742 833 IPR036770 -
Bma06g01328 838 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Bma06g01328 838 SMART PH_update 293 430 IPR001849 -
Bma06g01328 838 Gene3D - 654 838 IPR036770 -
Bma06g01328 838 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 583 IPR001164 GO:0005096
Bma06g01328 838 CDD ArfGap 503 631 - -
Bma06g01328 838 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Bma06g01328 838 Gene3D - 285 440 IPR011993 -
Bma06g01328 838 CDD PH_ACAP 295 432 - -
Bma06g01328 838 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Bma06g01328 838 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Bma06g01328 838 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Bma06g01328 838 ProSiteProfiles Ankyrin repeat profile. 745 777 IPR002110 GO:0005515
Bma06g01328 838 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 836 - -
Bma06g01328 838 Pfam BAR domain of APPL family 6 232 - -
Bma06g01328 838 ProSiteProfiles Ankyrin repeat profile. 778 810 IPR002110 GO:0005515
Bma06g01328 838 Pfam Ankyrin repeats (3 copies) 742 808 IPR002110 GO:0005515
Bma06g01328 838 MobiDBLite consensus disorder prediction 253 269 - -
Bma06g01328 838 Gene3D Arf GTPase activating protein 480 653 IPR038508 -
Bma06g01328 838 MobiDBLite consensus disorder prediction 246 270 - -
Bma06g01328 838 SMART arf_gap_3 500 619 IPR001164 GO:0005096
Bma06g01328 838 Coils Coil 118 138 - -
Bma06g01328 838 Pfam Putative GTPase activating protein for Arf 503 589 IPR001164 GO:0005096
Bma06g01328 838 Coils Coil 227 247 - -
Bma06g01328 838 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Bma06g01328 838 MobiDBLite consensus disorder prediction 441 465 - -
Bma06g01328 838 Pfam PH domain 294 427 IPR001849 -
Bma06g01328 838 MobiDBLite consensus disorder prediction 447 465 - -
Bma06g01328 838 PANTHER CENTAURIN/ARF 1 836 IPR045258 GO:0005096
Bma06g01328 838 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Bma06g01328 838 CDD BAR_SFC_plant 14 215 IPR035670 -
Bma06g01328 838 SMART ANK_2a 745 774 IPR002110 GO:0005515
Bma06g01328 838 SMART ANK_2a 778 807 IPR002110 GO:0005515
Bma06g01328 838 ProSiteProfiles Ankyrin repeat region circular profile. 778 809 - -
Bma06g01328 838 SUPERFAMILY ArfGap/RecO-like zinc finger 500 596 IPR037278 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01328 K12489 ACAP; Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein - qsu:111988141 1376.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01328 Bma-Chr6:50248891 Bma07g01337 Bma-Chr7:48898152 2.81E-23 dispersed
Bma15g00928 Bma-Chr15:33478632 Bma06g01328 Bma-Chr6:50248891 7.16E-11 dispersed
Bma02g01232 Bma-Chr2:54407668 Bma06g01328 Bma-Chr6:50248891 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1342 . . . Bda11g00373 Bpe13g00827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00226 . . Blo02g00208 . . Bda11g00373 Bpe14g00814 . . Bma06g01328 . . . . . . . . Cpe03g01178 . . . . . . . . . . . . . . . . Chy07g01544 Cme07g01989
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004542 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01328 Bma_Chr06 FPKM 41.743095 42.665173 28.398516 27.842068 6.627198 4.768105 5.603456 17.795143 17.258894 17.993168