Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01329 ATGAGTAAATCCTCCGTCGTTCTGCTTTTCCTATTTATATTCTGCTTCCACCAGTTGTCTGACGGAAAATGCCAGCCAAGAACGACCAAACACATCATCTCCGCCCACCCTCCATTGCCACCCGTTTCACCGAATTTCAAAAACAACCTCCAGAAGATCATTTTCAGCATCGCTTTAGGAGTTCTGACTGGTTTGATTGGGGCTGTTCTTTTTGCCTTCGTCGTCCGTAGCTTTATCGGGTACCTAAACAGAACCCCCATCCTCAGAGGCCCTGTTATATTTTCTCCCAAAATCGATCCGAAGACTCTTCGATTGGCTCTCCGAAACGAAAACCAGTTGCTTGGTTCGAGCCCCAACGGGAAGTACGTGAGGACTGTTCTTGACAACGGACTAACCATTGCAGTCAAGATACTCGAACCATTTGAGAAGTCGGCCAAGAGGCGGATTCAACAAGAGCTGGAAACACTTGCAGGGCTGAGACATAGAAACTTGATGAGCTTAAGAGCTTATATCCGAGAAGAAGACAGAATCTCTCTGGTTTATGATTATGTCCCTAATGGCAGTCTTGCTGATACAATGAAAAAAGTTAGAGAAAATGGCCTACAGCTCAGCTGGGAGATCAGGCTTAGAATTGCAGTTGGGGTGGTAAAGGGACTTCAGTATCTTCACTTTGAATGCCAACCTCCAATTCTGCACTGCAATTTGAAGCCTTCAAATGTTATTTTGGATGCAGAGTTCGAACCACGGTTGGCCGATTGTGGATTGACTAAGCTCATTCCTCATTTGGAAAGATCTACATCTGCTTATACTGCTCCAGAATGTCTGCAAAATGGCAGGGCCTTGTACCAACTTCATTTGGTGAAAGCTGAAACTGCTCGAGCTTGCATCCCGAAGGAGTTTAGATTAGTGGAAGCTTTTGGGTATACACTTGGTGGATTCTTTCTGGCCAGCTATGATGACAGTCCAGCGGGCGTATTTGATGAGCTTGTTGTGATTGCTGGAATTGTGTGGAACCGACCAACATCTTGCGCATGGGCGGCCAAAGTACTCGTGAATAGTGTTGAAGCTTGTGCTCACGGGCGGAAGGAAGTAGGGCTTCCAAGTCGAGTCGCTAAATTTTCCAAGATAATTACAGAAATTCCAAGGCATCAAAAAAGTAATGGTGGGTTTTTGAACTTAATTGGTATGAATTCTACCCTACAAAGTAAACAGGATCAGCTGAATGTGCAAGTGTGTGAAGTCAAGAGTTCTACTGCCACAGATGTCTGCAACATCAACCTTTCAACACATGTACCTTTGAATAAGTGGATGGGACCAGAAATCAAAATGTCACTTCCTAGTTATAGTGGCCATACAGAACACACTCCTGATCTGTTGAAATATTCTTGCCAAATTCAATGCAGGGTGCGAGCCGTGGAGCCGGCAAAAGTATCAGTTCTATCCACGAACGAAATGGACGAGTCAGTGGGTGGAAAAATCGGCGATGACGAACGAAACCTGAGCCTATCCGTGATGTTATCGAAACCATTTCTGGCTTTCGAAATGAGTTCCATGAAAATGCAGGTTGAAGCTCCAAGAGTTGTTTCTCATTTCTTCAAACAACAATCTGTGAGAGCCTAG 1620 44.81 MSKSSVVLLFLFIFCFHQLSDGKCQPRTTKHIISAHPPLPPVSPNFKNNLQKIIFSIALGVLTGLIGAVLFAFVVRSFIGYLNRTPILRGPVIFSPKIDPKTLRLALRNENQLLGSSPNGKYVRTVLDNGLTIAVKILEPFEKSAKRRIQQELETLAGLRHRNLMSLRAYIREEDRISLVYDYVPNGSLADTMKKVRENGLQLSWEIRLRIAVGVVKGLQYLHFECQPPILHCNLKPSNVILDAEFEPRLADCGLTKLIPHLERSTSAYTAPECLQNGRALYQLHLVKAETARACIPKEFRLVEAFGYTLGGFFLASYDDSPAGVFDELVVIAGIVWNRPTSCAWAAKVLVNSVEACAHGRKEVGLPSRVAKFSKIITEIPRHQKSNGGFLNLIGMNSTLQSKQDQLNVQVCEVKSSTATDVCNINLSTHVPLNKWMGPEIKMSLPSYSGHTEHTPDLLKYSCQIQCRVRAVEPAKVSVLSTNEMDESVGGKIGDDERNLSLSVMLSKPFLAFEMSSMKMQVEAPRVVSHFFKQQSVRA 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50262148 50269595 + Bma024440.1 Bma06g01329 84831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01329 539 Pfam Protein kinase domain 110 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01329 539 SUPERFAMILY Protein kinase-like (PK-like) 112 278 IPR011009 -
Bma06g01329 539 Gene3D Transferase(Phosphotransferase) domain 1 103 284 - -
Bma06g01329 539 PANTHER - 264 533 IPR039343 -
Bma06g01329 539 ProSiteProfiles Protein kinase domain profile. 108 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g01329 539 SUPERFAMILY Acetoacetate decarboxylase-like 269 374 IPR023375 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01329 - - - jre:108997356 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01329 Bma-Chr6:50262148 Bma11g00551 Bma-Chr11:7359307 1.32E-161 dispersed
Bma06g01329 Bma-Chr6:50262148 Bma08g00603 Bma-Chr8:38037157 1.90E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1341 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00159 . . . . . . Cone14ag0652 Cone15ag0664 . . . Csa04g00228 Chy11g01830 Cme11g02366 . . . . . . . Bma06g01329 . . . . . . . . Cpe03g01179 Bhi12g02390 . . . . . . . . . . . . . Lsi09g01767 . Chy07g01542 Cme07g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010981 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66559 PF00069 Pkinase 8.30E-24 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01329 Bma_Chr06 FPKM 6.498205 7.636488 19.758093 18.419432 6.865015 6.127648 7.932726 17.167765 15.657003 20.108889