Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01332 ATGGCGGGCAAACCCGAAGGAACAGTTCATCAGGACCCTGCTTCTTCTTCTTCTTCGCCCAAGGTCTCCGCCGGATCACCTGCACCGTCTGATGACGAGACCAAGAAATGGGGGACGCATATCATGGGGGCTCCGGCCTACCCGACCGCGCATCCCGACAACCAGATGGCGGCGGCGTGGAGCAACCCCGATCGCCAGCAGAACTATCACTACCCTTATGTTCAGCACTCGCCGGTTGGTCGCCCGACTAGCAATCCGTTAGAGCCTGTGATTCATTTATTCAATTCCTGGAGCTCCAGAGCCGAATCTATCTCCTGTAACATCTGGCATAATCTGAAAACGGGGAAGTCGGTATCGGAAGCAGCGTGGGGGAAGGTGAATCTAACTGCGAAAGCTATAACGGAGGGGGGGTTCGAGTCTCTTTTCCGGCAAACATTCGGCCACGATCCAAACGAGAACCTGAAGAAGACGTTCGCTTGTTACCTTTCAACGGCCACCGGGCCCGTCGCAGGAACCCTCTATTTGTCAACATTCCGGCTGGCATTTTGTAGCGATCGTCCATTGTACTTCACTGCTCCGTCTGGACAAACTTATTGGAGCTATTACAAGGTGGTGATACCACTGGGAAACACGGCGACTGTAAATCCGGTGGTGATGAAGGAAAAACCGCCGGAGAAATACATACAGATCTCGACTGTCGACGGCCATGATTTCTGGTTCATGGGTTTTGTGAATTTCGAAAAGGCAACTCACCATCTCTTGAATTCTGTTTCTGATTTCAGAGCAAATGTAGTTCCCTAA 801 51.94 MAGKPEGTVHQDPASSSSSPKVSAGSPAPSDDETKKWGTHIMGAPAYPTAHPDNQMAAAWSNPDRQQNYHYPYVQHSPVGRPTSNPLEPVIHLFNSWSSRAESISCNIWHNLKTGKSVSEAAWGKVNLTAKAITEGGFESLFRQTFGHDPNENLKKTFACYLSTATGPVAGTLYLSTFRLAFCSDRPLYFTAPSGQTYWSYYKVVIPLGNTATVNPVVMKEKPPEKYIQISTVDGHDFWFMGFVNFEKATHHLLNSVSDFRANVVP 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50290092 50291238 + Bma024443.1 Bma06g01332 84834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01332 266 MobiDBLite consensus disorder prediction 10 25 - -
Bma06g01332 266 PANTHER GEM-LIKE PROTEIN 2 21 263 IPR037848 -
Bma06g01332 266 Pfam GRAM domain 141 250 IPR004182 -
Bma06g01332 266 PANTHER GEM-LIKE PROTEIN 5 21 263 - -
Bma06g01332 266 SMART gram2001c 140 218 IPR004182 -
Bma06g01332 266 MobiDBLite consensus disorder prediction 1 39 - -
Bma06g01332 266 Gene3D - 138 258 IPR011993 -
Bma06g01332 266 CDD PH-GRAM_GEM 151 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01332 - - - qsu:112025225 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01332 Bma-Chr6:50290092 Bma08g00841 Bma-Chr8:46350299 1.36E-36 dispersed
Bma01g01388 Bma-Chr1:21819542 Bma06g01332 Bma-Chr6:50290092 2.54E-56 transposed
Bma09g00114 Bma-Chr9:3291509 Bma06g01332 Bma-Chr6:50290092 1.46E-53 transposed
Bma09g00124 Bma-Chr9:3615175 Bma06g01332 Bma-Chr6:50290092 1.46E-53 transposed
Bma13g00890 Bma-Chr13:38829506 Bma06g01332 Bma-Chr6:50290092 5.44E-47 transposed
Bma02g01237 Bma-Chr2:54478692 Bma06g01332 Bma-Chr6:50290092 2.62E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1330 . . . Bda11g00376 Bpe13g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00260 . . Blo02g00203 . . Bda11g00376 Bpe14g00808 . . Bma06g01332 . . . . . . . . Cpe03g01197 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005307 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01332 Bma_Chr06 FPKM 1.538066 2.037651 0.259192 0.179507 1.160401 1.891944 2.182698 0.146076 0.0 0.0