Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01334 ATGGTGGCAACCAAATCCAGAGCTGGGGATAGTGTGCCCTGCGATTACTGCACTGAACAAGTGGCGGTTCTCTACTGTCGAGCTGATTCAGCGAGGCTGTGCTTGTTTTGCGATCAGCATGTTCATTCTGCCAACTTGCTATCTCGGAAACATCTCCGATCTCAGATCTGCGATAATTGTGGATCTGAGCCGGTCTCGGTTCGTTGTTCGATGGACAATCTCGTTCTCTGTCAAGAATGTGATTGGGACGCCCATGGGAGTTGCTCTGTCTCTGCTGCACACGATCGGAGTCCGATCGAAGGCTTCTCTGGATGCCCTTCCGCCCTCGAGCTTGCTTCCGCGTGGGGCGTAGATCTAGTCTCGAAGAGGACCGGCCAATCTTCGCCCTTGTTTCAGAGCTGGGGATACGCCAAAGATGTGACCATTCCGATGGAGTCTTGGGCGGCGCATAAATCTGACGGGGCAGTTAATCTACAAGACTTGATTGTGCCGAACGAGAACCCCGTGGTTTTTGCTAATTTAAATTATGAGGACGAGATTTCTGGGATCAAGAGGCAAAGTTTGAGCTGCGGAAAGCACAAGCAAGTCATACATAAACAGTTAATTGAGTTATTTCGGCGAGAATTTGAGGGAGGTAGTGACATGAATGGCATGGGTGATGGTGGTGGTGGTGGTGTTGGTAGTAATTTGAATGACGAAGGTGGGGGTGGATTGGAGAATAGAGTGCCAGGGACTCCAAATCAGACTTGTTGGCCTGGAAATGTTGGGATTGATGTGGTTTCGGCCGGTATTGCTGCTAACCAATCTTCGCAGCAACAAGCACCATTTACTTCATTGCTAAGGATGACGACTCAAGTCGATTCGAATGGGAGTGAGCACATCATCGATGAAAATATTTTGTGGGATAACAATTCCAATAATCAGACTATTCAGATTTGGGATTTTAATTTAGGAAGGTCGAGGGATCATGAAGTATCAAGTCCATTAGAAGTTGCATATGATGCCAATGACTCAAAATTCATGATAACGAATTTTGGGGAACTTACGAAAGAAACATCTTTGAAAAACAAAAAGAAGTTGGGAGATATATACCGCTTCAATTGCCAGACAGCCCATGACGATATGACATCGATTAATAATAACGCCAAAAACCGCACTGCAAGCCAGGGTCCTGCCACATCCGAGAGCAACAACTTGCCAATCAGAAAGCCATCTTTGGCTGCAGCCTTTGATCAGCCCAAATCTTGCAGTATTGCTATTGAACGATCTATTCTGGGAAGCAGGGATAGGGCCAGATTGTCATCGGCAACCAAAGCAAACCTAGAGCTTCTGGCACAAAACAGAGGCAACGCCATGCAACGATATCAAGAGAAAAAGAAAAACCGAAGGTATGATAAGCGCATTAGATATGAGTCAAGGAAGGCAAGAGCTGACACTAGGAAGAGACTCAAGGGTCGATTTATGAAGGCCAACAAACCTTGA 1482 46.49 MVATKSRAGDSVPCDYCTEQVAVLYCRADSARLCLFCDQHVHSANLLSRKHLRSQICDNCGSEPVSVRCSMDNLVLCQECDWDAHGSCSVSAAHDRSPIEGFSGCPSALELASAWGVDLVSKRTGQSSPLFQSWGYAKDVTIPMESWAAHKSDGAVNLQDLIVPNENPVVFANLNYEDEISGIKRQSLSCGKHKQVIHKQLIELFRREFEGGSDMNGMGDGGGGGVGSNLNDEGGGGLENRVPGTPNQTCWPGNVGIDVVSAGIAANQSSQQQAPFTSLLRMTTQVDSNGSEHIIDENILWDNNSNNQTIQIWDFNLGRSRDHEVSSPLEVAYDANDSKFMITNFGELTKETSLKNKKKLGDIYRFNCQTAHDDMTSINNNAKNRTASQGPATSESNNLPIRKPSLAAAFDQPKSCSIAIERSILGSRDRARLSSATKANLELLAQNRGNAMQRYQEKKKNRRYDKRIRYESRKARADTRKRLKGRFMKANKP 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50294261 50296913 + Bma024445.1 Bma06g01334 84836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01334 493 Coils Coil 441 461 - -
Bma06g01334 493 MobiDBLite consensus disorder prediction 377 400 - -
Bma06g01334 493 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 9 492 - -
Bma06g01334 493 SMART bboxneu5 9 56 IPR000315 GO:0008270
Bma06g01334 493 SMART bboxneu5 57 99 IPR000315 GO:0008270
Bma06g01334 493 Pfam CCT motif 448 490 IPR010402 GO:0005515
Bma06g01334 493 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bma06g01334 493 MobiDBLite consensus disorder prediction 216 241 - -
Bma06g01334 493 ProSiteProfiles CCT domain profile. 448 490 IPR010402 GO:0005515
Bma06g01334 493 CDD Bbox1_BBX-like 13 56 - -
Bma06g01334 493 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 9 492 - -
Bma06g01334 493 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01334 - - - zju:107435241 555.058
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00924 Bma-Chr6:44829716 Bma06g01334 Bma-Chr6:50294261 7.86E-12 dispersed
Bma06g00932 Bma-Chr6:45146901 Bma06g01334 Bma-Chr6:50294261 7.86E-12 dispersed
Bma06g01334 Bma-Chr6:50294261 Bma12g00873 Bma-Chr12:39803012 1.52E-08 dispersed
Bma10g01045 Bma-Chr10:28619542 Bma06g01334 Bma-Chr6:50294261 3.42E-12 transposed
Bma02g01238 Bma-Chr2:54484129 Bma06g01334 Bma-Chr6:50294261 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1326 . . . Bda11g00378 Bpe13g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00287 . . Blo02g00202 . . Bda11g00378 Bpe14g00807 . . Bma06g01334 . . . . . . . . Cpe03g01212 . . . . . . . . . . . . . . . . Chy07g01493 Cme07g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004278 2 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57522 PF06203 CCT 1.40E-14 CL0281 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01334 Bma_Chr06 FPKM 0.298891 0.0 2.769334 3.289615 4.181626 3.711305 4.855158 3.818637 4.396254 3.642862