Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01339 TTTACAGTTGATACTGCAGATCAATCAGCATCTGAAAGCAGTATACCTTTATCACCCCAGTGGCTCTATGCCAAGCCCAGTGAAACTAAGATGGATATGCGTGCTCCTACTCCAGTTTCCCTGGCAAACTCTATTGATCCCAATCAGAAGGAGGGTTGGCGTCCGGATGGATCTGAAGACAAAAAAGATTGGAGGAGAATAACTGCTGACAATGAAATTAGTCGACGTTGGAGAGAAGAGGAAAGAGAAACTGGATTACTTTGTGGGAGAAGAGATCGTAGGAAATCTGATCGTCGTGCAGATAATGTCTCAATTCGAGATACAACTGAAAGTAGATCCATTCCCACTTCAGACCGTTGGCATGATGGTCGTAATGCAGGGCATGAAACTCGGCGTGACAACAAATGGTCGTCAAGATGGGGTCCTGAGGACAAAGATAAGGAATCTCGGACTGAAAAGCGATTAGATGCAGACAAGGATGATAATCATAATGACGGACAATTGGTGGGTAGCATGCGATCAACTTCTGAACGTGAATCTGAGTCTCGTGATAAATGGAGGCCTCGCCACAGAATGGAAATTCATTCAAGCAGCTCGGCAAGTCACCGAGCTGCACCTGGATTTGGCCTCGAGAGAGGGCGAGTGGAGGGTTTGAATTTAGGGTTTACTATTGGACGAGGAAGGGCAAATATCATAGGGAGATCATCTGCTGGCCTGATCGGTGCCCCTCACTTGGATAATAGTGAACACACCCTTCGGAAATTGAAATATCCAGTTCTCACATTTTGCTATCCTAGGGGTAAGATTCTTGATATTTATCGAAGCCAAAAACTTAATCCATCTTTTGCTGCCATGCCAGCCGAGATGGAAGATTCAGATGCCATAACTCAGTCAGATGTTCTGGAACCTCTGGCATTTAGTGCGCCAAGTGATGTGGAAGAGGCTGCTCTAAGTGATATTTGGAAAGGAAAGATAAACAGTAGCGGGGTGGTCTATGACTCATATCGAAAGGAGAAATCCCGTGAGCATGATGGGGATGTGGACTCTATCGAGGGAAATTCAGGAATTCTACCTTCATATTTAACAACTGAAAATACTACTGTTCTTTGTGCAGGGGATTCAGCAATTATTAAGGAAGAAAAAAAAGTTCTACCTTCAACTCTCTGTGAAGAGACTGCTGGCTCCCTTCAAGAAGTTGCAAATGGTTATGCATATAATGCCATTGACAAGAATACAATGTGGAATTATGGTTTATTTAGAAATTTAATGAAAGAAAGAAATGCTCGAAATGAGTATCGACTTAAAGCACCAGTTGCTTGGTCAGATTCTGATGCTTTGGTTACTATGAGTTCTAAAGGTAGTGTTGTTCAAAATGTATTGGAGATTGGTGGTGCTAGTCAAAGTGCTTCACAAACCAGTGGTCGTGATAGTGGGCAAATGGAGAATTCTGGTTTCAAGTATAATCCAGTCAATGACAATGAGGTGGAAAATTCTTTGGGTGTCAATCCGAATCTTCCCGATGGTTCAAGTTCTCTCTTTCAAATGCCCTCCTCTGACCAGAATCAATTCAGTAGCTCCAATGCTGAAAATGTAGGAAAGGCAACCCCACCTGAGGAATTGAGTTTGTACTACCTTGATCCTCATGGGATTATACAAGGGCCCTTCATAGGGGCAGATATTATCTTGTGGTATGAGCAGGGATTTTTTGGGACTGACCTTCCTGTCCGACTTTATGACGCTCCTGAAGAGACACCTTTCCAAAGTTTAGGTGGAGTAATGCCACATTTAAAAGATAGTACTGGATCTTCTAATGTTGCTGTATCAAATTCTACACTTGAGCAAACTGATACCCCATTAAGGAATATGGAAGATAGTTTTGCTTCTCTCCCCATTCCAGAAACTTCTGACTTATGTGCTGAGCTGAGCCTGCCATTGGCTGAGATCAATAAGTTCCCTCAACTCATTCCACCGAGAATGTCCGAGCCTGAAGATCCACTGCGAGTACCACATACCAAGGGCCAAAGCTTTCATGATTTTATAGTGCAGGACGAAGAAATTGTATTTCCAGGAAGACCAGTAAACACTGACTATCCAGTTCCAAGGTCTTCTGGGGGGGTTCCTCTGGGAAATTTATTAAGTCAAGCTTTCTCCAATCAAGTTGCAGAGCCTGGTTTGGCAGGTCAGAATAATAGCAGGATGCACCCTTTTGGTTTGATGTGGTCTGAGCTTGAAAGCACAAGTTCAAAGCATGTGAAACCATCTAATATACCAACCAGCGGGGGAAGGGTTGCTCCATTAGGTGCCATGGCTGATCCATCACCTTCCACGGAGGCATGGTTTGATGGTTATAGAAAAAATTCATATTCTGACAACTTGTATCAAGACACGTCGTCACGACATTTGGGACGCGTGGAAAAAGAATCGAACTCTTTTGATTTACCAGACCAGCTTATTTCACACCAATATCACCAACAGCTAAATTTGTCATCTCCTCACGTAAATGAATCAGCTATTGATCATGCACGGCATAATCGTATTCAGCAACAGTTGTTGTCTGAACATTCTGCCACAGATCTGGATCGTCGTTTAGCTATCCAACTACGACAGCAGCAACAGCTTCAACTGCAACAACATCATTTGCGACAACAACAGTTTCAGCAACAGCAGAAGTTCTTGCAGGAGCAACAGCAAAAATTCTTGCAAGAGCAACAGCAGTCTCAAGTTCGACAAGTGCTGCTTGAACAGTTGCATGGACAAATGCGCGATCCTGGCCCTGTGCAGTCACATTTTAATCAACTTGGAGCCAATAATGTTCTAGATCAGGTGATCTTAGAGCAGCAGCGTGTACATGACCTACAACAATTGTCACAACGGAATTTAAGACATTCAAACCCATCTTTTGAGCATTCTATTCACTCTAAATTTGGTCAGATGCGACAACAAGATCATCATAGAGATTTGTTGGAGCTAATATCTCGAGCACAACAAGGAAAAATCCAGTCAATGGAGCAACAAATGCTACAGCAAGAACAGATGCTACAGCAAGAACAGATGCTTCAGCAAGAACAGAGACTTCAACAAGAACAGATGCTTCAGCAAGAACAGATGCTTCAGCAAGAACAGATGCTTCAGCAAGAACAGATGCAAGCCAAGTATTTGTCAATGGGGTTGAGACGAACCACTTTGGAAGACGAGAGGCATGTTGCTTCTATCTGGCCAGGTGAGGAGCCAGGTCAGCAGTTTTTCAGGTCTCGTCCTACCCCTCAAAGAGTGAATTCTGCAACCTTTGATTTATATCAGCAACAGAGGCCATCTCATGATGAACAGCTGAATCACCTTGATCGCAATCTTTCATATCAAGATCTAATTCTTCAGTCTGGATCGTTTCCATTTGAGAGGTCTATGACTTTGCCTTCTGGTCCTCCTGAAATTAATTTGGATGCTGTCAATAGTTTGGTTCGTCCACATGGTTTAGACATGCTTGATTCCAGTGTTCGTATCCCATCTGGTGGTCAATATGGAGCATCTGGAGCTGGTATTAATGTGCATAATTATGAACATAGTGTTGTACCTAATCACTTTCAAGTTTCACATTTGGATGGAATTGAGAGCCATTGGTCGGAAAAAAATGAGCAAGTCCATCTTAGTTCTGAGCTGTTAAAGAGGGAGTCAAAATCTAATATGACTTCTGGAGATCCAGTTTTATGGATGTCAGATGGGTTAAATGATGAAAAGTCAAAGCGACTATTGATGGATTTGCTGAATAAGAAATCAGTCCAACCTTCAGAGCCCTTTAATGTTGGTAATGGAGTATCTTACAATAGGGTTTCCGCTGGCTTCTTTTCTGGATCAGGCGCTGCAGATAATCCATTCAATCTTAATTTAGACAAAGAAGCTGGTCTAAACAGCTCTTTTCATGTGGGCTCATATGGTTCTAATACATGCGAACCATTGCAGGCTCATCAGCACATCAGTTTGGGAGGCAAAGAAAAAGTCCCATATAGATCAATTCCTGGAGCTTGCATTGATGAGGATTCTATGGGTGTTAAAACGGGTGACATAATGTATGCACATTCTAACCCAGTTAGTAAGCTGTCGGTAAACAAAGAGCTTGTAGATGCAGGAGGTAGGAGCCGTGATAGTTTGAAAAATCAAACTTTTGATGTTCAAGAACGAATGCTTGAACATGGAATGTTGACTGCAGCAGATCATGGAGGAACTGTAAACAATGTCCTTAGCAGGCATTCTTCTCTTGGATCTACCGGCTTTAACAACTACATGGGCATGGTTAACTCATTACCTGAAGATATTGCTAAAGACCAAAGTTTATTTAAGGTGAAGCTATATCTGACTGATTTATTTTGTTTCCCAACTCCTTACAGGGTAAATATGCTTTCCAAAGATACTATTTTGTTGAGGCGGCCTCCCGTCTCTCGTGCCGTGTCATCTCATGAAGGATTATCGGAGCTAGTTTCTGATTCTATCAGAGGGCAAAGTATGTCCAATGGCCCTGCGGATGAAGCAAGATCAAGCCAGAGTACAGATGTGTCGGTAATGTTCGGAAAGAAGGAGATGAGATTTCGACGGACATCATCAGGAAGCGAAGCAGACGTGTCAGAGGCATCGTTTATCGACATGCTGAAGAAGACTGCAGCCCCTGAAGCACACTTGGCTGCAGCCATTCCCGAGCCAACAGATGGATCACAGGGGGGGAAAGGGGGGAAGAAGAAAGGAAAGAAGGGGCGGCAAATCGACCCGGCTTTGCTTGGCTTCAAAGTCACGAGCAACCGAATAATGATGGGCGAAATACAGCGTGTAGAGGATTGA 4827 43.22 FTVDTADQSASESSIPLSPQWLYAKPSETKMDMRAPTPVSLANSIDPNQKEGWRPDGSEDKKDWRRITADNEISRRWREEERETGLLCGRRDRRKSDRRADNVSIRDTTESRSIPTSDRWHDGRNAGHETRRDNKWSSRWGPEDKDKESRTEKRLDADKDDNHNDGQLVGSMRSTSERESESRDKWRPRHRMEIHSSSSASHRAAPGFGLERGRVEGLNLGFTIGRGRANIIGRSSAGLIGAPHLDNSEHTLRKLKYPVLTFCYPRGKILDIYRSQKLNPSFAAMPAEMEDSDAITQSDVLEPLAFSAPSDVEEAALSDIWKGKINSSGVVYDSYRKEKSREHDGDVDSIEGNSGILPSYLTTENTTVLCAGDSAIIKEEKKVLPSTLCEETAGSLQEVANGYAYNAIDKNTMWNYGLFRNLMKERNARNEYRLKAPVAWSDSDALVTMSSKGSVVQNVLEIGGASQSASQTSGRDSGQMENSGFKYNPVNDNEVENSLGVNPNLPDGSSSLFQMPSSDQNQFSSSNAENVGKATPPEELSLYYLDPHGIIQGPFIGADIILWYEQGFFGTDLPVRLYDAPEETPFQSLGGVMPHLKDSTGSSNVAVSNSTLEQTDTPLRNMEDSFASLPIPETSDLCAELSLPLAEINKFPQLIPPRMSEPEDPLRVPHTKGQSFHDFIVQDEEIVFPGRPVNTDYPVPRSSGGVPLGNLLSQAFSNQVAEPGLAGQNNSRMHPFGLMWSELESTSSKHVKPSNIPTSGGRVAPLGAMADPSPSTEAWFDGYRKNSYSDNLYQDTSSRHLGRVEKESNSFDLPDQLISHQYHQQLNLSSPHVNESAIDHARHNRIQQQLLSEHSATDLDRRLAIQLRQQQQLQLQQHHLRQQQFQQQQKFLQEQQQKFLQEQQQSQVRQVLLEQLHGQMRDPGPVQSHFNQLGANNVLDQVILEQQRVHDLQQLSQRNLRHSNPSFEHSIHSKFGQMRQQDHHRDLLELISRAQQGKIQSMEQQMLQQEQMLQQEQMLQQEQRLQQEQMLQQEQMLQQEQMLQQEQMQAKYLSMGLRRTTLEDERHVASIWPGEEPGQQFFRSRPTPQRVNSATFDLYQQQRPSHDEQLNHLDRNLSYQDLILQSGSFPFERSMTLPSGPPEINLDAVNSLVRPHGLDMLDSSVRIPSGGQYGASGAGINVHNYEHSVVPNHFQVSHLDGIESHWSEKNEQVHLSSELLKRESKSNMTSGDPVLWMSDGLNDEKSKRLLMDLLNKKSVQPSEPFNVGNGVSYNRVSAGFFSGSGAADNPFNLNLDKEAGLNSSFHVGSYGSNTCEPLQAHQHISLGGKEKVPYRSIPGACIDEDSMGVKTGDIMYAHSNPVSKLSVNKELVDAGGRSRDSLKNQTFDVQERMLEHGMLTAADHGGTVNNVLSRHSSLGSTGFNNYMGMVNSLPEDIAKDQSLFKVKLYLTDLFCFPTPYRVNMLSKDTILLRRPPVSRAVSSHEGLSELVSDSIRGQSMSNGPADEARSSQSTDVSVMFGKKEMRFRRTSSGSEADVSEASFIDMLKKTAAPEAHLAAAIPEPTDGSQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRVED 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50323965 50331277 + Bma024450.1 Bma06g01339 84841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01339 1608 MobiDBLite consensus disorder prediction 465 532 - -
Bma06g01339 1608 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1020 1608 - -
Bma06g01339 1608 PANTHER GYF DOMAIN-CONTAINING PROTEIN 4 1026 - -
Bma06g01339 1608 SMART gyf_5 540 595 IPR003169 GO:0005515
Bma06g01339 1608 MobiDBLite consensus disorder prediction 1 20 - -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 176 197 - -
Bma06g01339 1608 Gene3D - 526 617 IPR035445 -
Bma06g01339 1608 Coils Coil 999 1019 - -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 1 206 - -
Bma06g01339 1608 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1020 1608 - -
Bma06g01339 1608 PANTHER GYF DOMAIN-CONTAINING PROTEIN 4 1026 - -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 1485 1515 - -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 1558 1584 - -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 1482 1515 - -
Bma06g01339 1608 Pfam GYF domain 543 589 IPR003169 GO:0005515
Bma06g01339 1608 SUPERFAMILY GYF domain 534 598 IPR035445 -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 52 166 - -
Bma06g01339 1608 MobiDBLite consensus disorder prediction 465 534 - -
Bma06g01339 1608 ProSiteProfiles GYF domain profile. 539 590 IPR003169 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01339 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - qsu:112017475 1316.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02315 Bma-Chr1:80674336 Bma06g01339 Bma-Chr6:50323965 2.72E-16 dispersed
Bma04g00206 Bma-Chr4:1799595 Bma06g01339 Bma-Chr6:50323965 3.07E-14 dispersed
Bma02g01241 Bma-Chr2:54508480 Bma06g01339 Bma-Chr6:50323965 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g01339 Bma_Chr06 FPKM 36.740025 38.767258 5.20994 5.694809 0.0 0.0 0.0 0.0 0.162293 0.294987