Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01340 ATGGAGTTTTCCGGTGGTATTCACAACAGATTTGCGCCGGAGAATGATGAGCCAGTGAAGAGAAAGGGTGAGAAGAAAATAAGAAGTCCGAGATATGCTTTCCAAACCAGAAGCCAAGTTGATATACTTGATGATGGATATAGATGGCGAAAATATGGACAGAAAGCTGTCAAGAACAACAAATTTCCCAGAAGCTACTACAGATGCACTCATCAAGGCTGCAAGGTGAAAAAACAAGTTCAAAGATTAACAAAAGATGAGGGAGTTATCGTGACCACTTACGAAGGCGTACATTCACATCCGATCGAGAAATCAACTGAAAATTTCGAGCGCATTTTAAACCAAATGCAAATCTTTACTTCTTAG 366 39.89 MEFSGGIHNRFAPENDEPVKRKGEKKIRSPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTKDEGVIVTTYEGVHSHPIEKSTENFERILNQMQIFTS 121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50333972 50339230 + Bma024451.1 Bma06g01340 84842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01340 121 MobiDBLite consensus disorder prediction 1 30 - -
Bma06g01340 121 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 18 118 - -
Bma06g01340 121 SMART WRKY_cls 43 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01340 121 Pfam WRKY DNA -binding domain 44 101 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01340 121 ProSiteProfiles WRKY domain profile. 38 103 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma06g01340 121 SUPERFAMILY WRKY DNA-binding domain 35 102 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01340 121 Gene3D WRKY domain 22 102 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma06g01340 121 MobiDBLite consensus disorder prediction 13 30 - -
Bma06g01340 121 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 118 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00833 Bma-Chr5:45706280 Bma06g01340 Bma-Chr6:50333972 5.60E-40 dispersed
Bma06g01340 Bma-Chr6:50333972 Bma11g00956 Bma-Chr11:42675043 6.26E-36 dispersed
Bma06g01340 Bma-Chr6:50333972 Bma02g00935 Bma-Chr2:49202332 2.30E-34 transposed
Bma06g01340 Bma-Chr6:50333972 Bma01g00117 Bma-Chr1:1178049 4.75E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57524 PF03106 WRKY 1.80E-26 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01340 - - cit:102621886 202.601