Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g01341 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAAATCAACAGGCAAGTGACCTTCGCGAAGAGAAGAAATGGACTTTTGAAGAAAGCCTATGAGCTTTCCGTTCTTTGCGATGCAGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAATCCTTGAGAGGTACCAAAAATGCAACTACGGAGCACCAGAGCCTTCTGTTTCCACAAGAGAAGCCATGGAGTTAAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCACGTTATGAAGCTCTACTGAAATCCCAAAGGAACCTTTTGGGTGAAGATCTTGGGCCTTTGAGTAGTAAAGAGCTTGAGTCGCTCGAAAGGCAGTTGGATTCATCACTCAAACAGATCAGATCAACAAGGACTCAGTATATGCTGGATCAGCTCACTGATCTTCAACGCAAGGAACACTTGCTGAATGAAGCAAACAAGACCCTGAAACATAGGCTAGCGGAAGGCTACCAAATAAGTTCACTGCAACTGATTTCAAATGAAGAGGAAGTTGTTTATGATCGACAGCATCCTCAATCTCAAGGAGGTGGATTCTTTCATCCCTTAGACTGCGAACCAACTTTGCACATTGGATATCCGCCTGATTCAATAACAGTGGTGGATGCAGGCTCAAGCATGAACAATTACATGCCAGCCTGGTTGCCATGA 729 44.72 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKILERYQKCNYGAPEPSVSTREAMELSSQQEYLKLKARYEALLKSQRNLLGEDLGPLSSKELESLERQLDSSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKHRLAEGYQISSLQLISNEEEVVYDRQHPQSQGGGFFHPLDCEPTLHIGYPPDSITVVDAGSSMNNYMPAWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 50356222 50364662 + Bma024452.1 Bma06g01341 84843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g01341 242 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma06g01341 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma06g01341 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma06g01341 242 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bma06g01341 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma06g01341 242 Coils Coil 126 146 - -
Bma06g01341 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bma06g01341 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bma06g01341 242 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Bma06g01341 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Bma06g01341 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma06g01341 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma06g01341 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma06g01341 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma06g01341 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00866 Bma-Chr3:8404030 Bma06g01341 Bma-Chr6:50356222 1.56E-78 dispersed
Bma04g00845 Bma-Chr4:10563643 Bma06g01341 Bma-Chr6:50356222 8.07E-131 dispersed
Bma04g00847 Bma-Chr4:10666803 Bma06g01341 Bma-Chr6:50356222 2.66E-132 dispersed
Bma05g01120 Bma-Chr5:49986424 Bma06g01341 Bma-Chr6:50356222 3.57E-71 dispersed
Bma06g01341 Bma-Chr6:50356222 Bma14g01058 Bma-Chr14:12791783 4.16E-73 dispersed
Bma13g00588 Bma-Chr13:13529978 Bma06g01341 Bma-Chr6:50356222 1.30E-25 dispersed
Bma14g02102 Bma-Chr14:44468831 Bma06g01341 Bma-Chr6:50356222 3.67E-15 transposed
Bma01g02062 Bma-Chr1:76049137 Bma06g01341 Bma-Chr6:50356222 4.69E-48 transposed
Bma02g01245 Bma-Chr2:54543470 Bma06g01341 Bma-Chr6:50356222 3.25E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57525 PF01486 K-box 2.50E-25 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g01341 - - tcc:18608957 417.542